title: RNA sequence determinants of a coupled termination-reinitiation strategy for downstream open reading frame translation in Helminthosporium victoriae virus 190S and other victoriviruses (Family Totiviridae).
abstract: The genome-length, dicistronic mRNA of the double-stranded RNA fungal virus Helminthosporium victoriae virus 190S (genus Victorivirus, family Totiviridae) contains two long open reading frames (ORFs) that overlap in the tetranucleotide AUGA. Translation of the downstream ORF, which encodes the RNA-dependent RNA polymerase (RdRp), has been proposed to depend on ribosomal reinitiation following termination of the upstream ORF, which encodes the capsid protein. In the current study, we examined the RNA sequence determinants for RdRp translation in this virus and demonstrated that a coupled termination-reinitiation (stop-restart) strategy is indeed used. Signals for termination-reinitiation are found within a 32-nucleotide stretch of RNA immediately upstream of the AUGA motif, including a predicted pseudoknot structure. The close proximity in which this predicted structure is followed by the upstream ORF's stop codon appears to be especially important for promoting translation of the downstream ORF. The normal strong preferences for an AUG start codon and the canonical sequence context to favor translation initiation appear somewhat relaxed for the downstream ORF. Similar sequence motifs and predicted RNA structures in other victoriviruses suggest that they all share a related stop-restart strategy for RdRp translation. Members of the genus Victorivirus thus provide new and unique opportunities for exploring the molecular mechanisms of translational coupling, which remain only partly understood in this and other systems.
authors.affiliation: Plant Pathology Department, University of Kentucky, Lexington, KY 40546-0312, USA.
authors.forename: Hua
authors.initials: H
authors.lastname: Li
authors.forename: Wendy M
authors.initials: WM
authors.lastname: Havens
authors.forename: Max L
authors.initials: ML
authors.lastname: Nibert
authors.forename: Said A
authors.initials: SA
authors.lastname: Ghabrial
mesh_terms: D001483:Base Sequence; D015153:Blotting, Western; D018388:Codon, Terminator; D008969:Molecular Sequence Data; D016366:Open Reading Frames; D012367:RNA, Viral / Q000235:genetics*; D017386:Sequence Homology, Amino Acid; D013728:Terminator Regions, Genetic; D019196:Totiviridae / Q000235:genetics*
chemical_list: D018388:Codon, Terminator; D012367:RNA, Viral