title: Solution structure of a repeated unit of the ABA-1 nematode polyprotein allergen of Ascaris reveals a novel fold and two discrete lipid-binding sites.
abstract: BACKGROUND
  Nematode polyprotein allergens (NPAs) are an unusual class of lipid-binding proteins found only in nematodes. They are synthesized as large, tandemly repetitive polyproteins that are post-translationally cleaved into multiple copies of small lipid binding proteins with virtually identical fatty acid and retinol (Vitamin A)-binding characteristics. They are probably central to transport and distribution of small hydrophobic compounds between the tissues of nematodes, and may play key roles in nutrient scavenging, immunomodulation, and IgE antibody-based responses in infection. In some species the repeating units are diverse in amino acid sequence, but, in ascarid and filarial nematodes, many of the units are identical or near-identical. ABA-1A is the most common repeating unit of the NPA of Ascaris suum, and is closely similar to that of Ascaris lumbricoides, the large intestinal roundworm of humans. Immune responses to NPAs have been associated with naturally-acquired resistance to infection in humans, and the immune repertoire to them is under strict genetic control.
  
  
  RESULTS
  The solution structure of ABA-1A was determined by protein nuclear magnetic resonance spectroscopy. The protein adopts a novel seven-helical fold comprising a long central helix that participates in two hollow four-helical bundles on either side. Discrete hydrophobic ligand-binding pockets are found in the N-terminal and C-terminal bundles, and the amino acid sidechains affected by ligand (fatty acid) binding were identified. Recombinant ABA-1A contains tightly-bound ligand(s) of bacterial culture origin in one of its binding sites.
  
  
  CONCLUSIONS
  This is the first mature, post-translationally processed, unit of a naturally-occurring tandemly-repetitive polyprotein to be structurally characterized from any source, and it belongs to a new structural class. NPAs have no counterparts in vertebrates, so represent potential targets for drug or immunological intervention. The nature of the (as yet) unidentified bacterial ligand(s) may be pertinent to this, as will our characterization of the unusual binding sites.
authors.affiliation: School of Chemistry, University of Glasgow, Glasgow, Scotland, UK.
authors.forename: Nicola A G
authors.initials: NA
authors.lastname: Meenan
authors.forename: Graeme
authors.initials: G
authors.lastname: Ball
authors.forename: Krystyna
authors.initials: K
authors.lastname: Bromek
authors.forename: Dušan
authors.initials: D
authors.lastname: Uhrín
authors.forename: Alan
authors.initials: A
authors.lastname: Cooper
authors.forename: Malcolm W
authors.initials: MW
authors.lastname: Kennedy
authors.forename: Brian O
authors.initials: BO
authors.lastname: Smith
mesh_terms: D000485:Allergens / Q000737:chemistry* / Q000378:metabolism; D000818:Animals; D052179:Antigens, Plant / Q000737:chemistry* / Q000378:metabolism; D017165:Ascaris suum / Q000737:chemistry*; D001665:Binding Sites; D015801:Helminth Proteins / Q000737:chemistry* / Q000378:metabolism; D050356:Lipid Metabolism; D009682:Magnetic Resonance Spectroscopy; D008958:Models, Molecular; D017433:Protein Structure, Secondary; D017434:Protein Structure, Tertiary
chemical_list: C093689:ABA-1 protein, Ascaris suum; D000485:Allergens; D052179:Antigens, Plant; D015801:Helminth Proteins