title: Use of tuf gene-based primers for the PCR detection of probiotic Bifidobacterium species and enumeration of bifidobacteria in fermented milk by cultural and quantitative real-time PCR methods.
abstract: Due to the increasing use of bifidobacteria in probiotic products, it is essential to establish a rapid method for the qualitative and quantitative assay of the bifidobacteria in commercial products. In this study, partial sequences of the tuf gene for 18 Bifidobacterium strains belonging to 14 species were determined. Alignment of these sequences showed that the similarities among these Bifidobacterium species were 82.24% to 99.72%. Based on these tuf gene sequences, 6 primer sets were designed for the polymerase chain reaction (PCR) assay of B. animalis subsp. animalis, B. animalis subsp. lactis, B. bifidum, B. breve, B. longum subsp. infantis, B. longum subsp. longum, and the genus of Bifidobacterium, respectively. These Bifidobacterium species are common probiotic species present in dairy and probiotic products. When each target Bifidobacterium spp. was assayed with the designed primers, PCR product with expected size was generated. In addition, for each target species, more than 70 bacterial strains other than the target species, including strains of other Bifidobacterium species, strains of Lactobacillus spp., Enterococcus spp., and other bacterial species, all generated negative results. PCR assay with primers specific to B. animalis subsp. lactis and B. longum subsp. longum confirmed the presence of these Bifidobacterium species in commercial yogurt products. In addition, for each product, enumeration of the bifidobacteria cells by culture method with BIM-25 agar and the quantitative real-time PCR showed similar cell counts. Such results indicated that within 15-d storage (4 °C) after manufacture, all the bifidobacteria cells originally present in yogurt products were viable and culturable during the storage.
authors.affiliation: Dept. of Food Science and Biotechnology, Natl. Chung Hsing Univ., No. 250, Kuo Kuang Rd. Taichung City, Taiwan 402, Republic of China.
authors.forename: Sen-Je
authors.initials: SJ
authors.lastname: Sheu
authors.forename: Wen-Zhe
authors.initials: WZ
authors.lastname: Hwang
authors.forename: Yu-Cheng
authors.initials: YC
authors.lastname: Chiang
authors.forename: Wen-Hsin
authors.initials: WH
authors.lastname: Lin
authors.forename: Hsin-Chih
authors.initials: HC
authors.lastname: Chen
authors.forename: Hau-Yang
authors.initials: HY
authors.lastname: Tsen
mesh_terms: D058491:Bacterial Load; D001426:Bacterial Proteins / Q000737:chemistry / Q000235:genetics / Q000378:metabolism; D001483:Base Sequence; D001644:Bifidobacterium / Q000235:genetics / Q000254:growth & development* / Q000302:isolation & purification* / Q000378:metabolism; D043302:Cultured Milk Products / Q000382:microbiology*; D030561:Databases, Nucleic Acid; D007777:Lactobacillaceae / Q000254:growth & development / Q000302:isolation & purification; D057230:Limit of Detection; D050296:Microbial Viability; D008969:Molecular Sequence Data; D058889:Molecular Typing; D010444:Peptide Elongation Factor Tu / Q000737:chemistry / Q000235:genetics / Q000378:metabolism*; D016133:Polymerase Chain Reaction; D019936:Probiotics / Q000302:isolation & purification*; D012034:Refrigeration; D016415:Sequence Alignment; D012689:Sequence Homology, Nucleic Acid; D013997:Time Factors; D015014:Yogurt / Q000382:microbiology
chemical_list: D001426:Bacterial Proteins; D010444:Peptide Elongation Factor Tu