title: Functional genomics unique to week 20 post wounding in the deep cone/fat dome of the Duroc/Yorkshire porcine model of fibroproliferative scarring.
abstract: BACKGROUND
  Hypertrophic scar was first described over 100 years ago; PubMed has more than 1,000 references on the topic. Nevertheless prevention and treatment remains poor, because 1) there has been no validated animal model; 2) human scar tissue, which is impossible to obtain in a controlled manner, has been the only source for study; 3) tissues typically have been homogenized, mixing cell populations; and 4) gene-by-gene studies are incomplete.
  
  
  RESULTS
  We have assembled a system that overcomes these barriers and permits the study of genome-wide gene expression in microanatomical locations, in shallow and deep partial-thickness wounds, and pigmented and non-pigmented skin, using the Duroc(pigmented fibroproliferative)/Yorkshire(non-pigmented non-fibroproliferative) porcine model. We used this system to obtain the differential transcriptome at 1, 2, 3, 12 and 20 weeks post wounding. It is not clear when fibroproliferation begins, but it is fully developed in humans and the Duroc breed at 20 weeks. Therefore we obtained the derivative functional genomics unique to 20 weeks post wounding. We also obtained long-term, forty-six week follow-up with the model.
  
  
  CONCLUSIONS
  1) The scars are still thick at forty-six weeks post wounding further validating the model. 2) The differential transcriptome provides new insights into the fibroproliferative process as several genes thought fundamental to fibroproliferation are absent and others differentially expressed are newly implicated. 3) The findings in the derivative functional genomics support old concepts, which further validates the model, and suggests new avenues for reductionist exploration. In the future, these findings will be searched for directed networks likely involved in cutaneous fibroproliferation. These clues may lead to a better understanding of the systems biology of cutaneous fibroproliferation, and ultimately prevention and treatment of hypertrophic scarring.
authors.affiliation: Department of Surgery, Division of Plastic Surgery, University of Washington, Seattle, Washington, United States of America. engrav@u.washington.edu
authors.forename: Loren H
authors.initials: LH
authors.lastname: Engrav
authors.forename: Christopher K
authors.initials: CK
authors.lastname: Tuggle
authors.forename: Kathleen F
authors.initials: KF
authors.lastname: Kerr
authors.forename: Kathy Q
authors.initials: KQ
authors.lastname: Zhu
authors.forename: Surawej
authors.initials: S
authors.lastname: Numhom
authors.forename: Oliver P
authors.initials: OP
authors.lastname: Couture
authors.forename: Richard P
authors.initials: RP
authors.lastname: Beyer
authors.forename: Anne M
authors.initials: AM
authors.lastname: Hocking
authors.forename: Gretchen J
authors.initials: GJ
authors.lastname: Carrougher
authors.forename: Maria Luiza C
authors.initials: ML
authors.lastname: Ramos
authors.forename: Matthew B
authors.initials: MB
authors.lastname: Klein
authors.forename: Nicole S
authors.initials: NS
authors.lastname: Gibran
mesh_terms: D000818:Animals; D002921:Cicatrix / Q000235:genetics / Q000473:pathology*; D004195:Disease Models, Animal; D005260:Female; D020869:Gene Expression Profiling; D023281:Genomics; D013552:Swine; D014945:Wound Healing; D014947:Wounds and Injuries / Q000235:genetics / Q000473:pathology*