title: Formation of VEGF isoform-specific spatial distributions governing angiogenesis: computational analysis.
abstract: BACKGROUND
  The spatial distribution of vascular endothelial growth factor A (VEGF) is an important mediator of vascular patterning. Previous experimental studies in the mouse hindbrain and retina have suggested that VEGF alternative splicing, which controls the ability of VEGF to bind to heparan sulfate proteoglycans (HSPGs) in the extracellular matrix (ECM), plays a key role in controlling VEGF diffusion and gradients in tissues. Conversely, proteolysis notably by matrix metalloproteinases (MMPs), plays a critical role in pathological situations by releasing matrix-sequestered VEGF and modulating angiogenesis. However, computational models have predicted that HSPG binding alone does not affect VEGF localization or gradients at steady state.
  
  
  RESULTS
  Using a 3D molecular-detailed reaction-diffusion model of VEGF ligand-receptor kinetics and transport, we test alternate models of VEGF transport in the extracellular environment surrounding an endothelial sprout. We show that differences in localization between VEGF isoforms, as observed experimentally in the mouse hindbrain, as well as the ability of proteases to redistribute VEGF in pathological situations, are consistent with a model where VEGF is endogenously cleared or degraded in an isoform-specific manner. We use our predictions of the VEGF distribution to quantify a tip cell's receptor binding and gradient sensing capacity. A novel prediction is that neuropilin-1, despite functioning as a coreceptor to VEGF₁₆₅-VEGFR2 binding, reduces the ability of a cell to gauge the relative steepness of the VEGF distribution. Comparing our model to available in vivo vascular patterning data suggests that vascular phenotypes are most consistently predicted at short range by the soluble fraction of the VEGF distributions, or at longer range by matrix-bound VEGF detected in a filopodia-dependent manner.
  
  
  CONCLUSIONS
  Isoform-specific VEGF degradation provides a possible explanation for numerous examples of isoform specificity in VEGF patterning and examples of proteases relocation of VEGF upon release.
authors.affiliation: Department of Biomedical Engineering, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA.
authors.forename: Prakash
authors.initials: P
authors.lastname: Vempati
authors.forename: Aleksander S
authors.initials: AS
authors.lastname: Popel
authors.forename: Feilim
authors.initials: F
authors.lastname: Mac Gabhann
mesh_terms: D017398:Alternative Splicing; D000818:Animals; D002462:Cell Membrane; D019295:Computational Biology / Q000379:methods*; D003201:Computers; D004058:Diffusion; D005109:Extracellular Matrix / Q000378:metabolism; D006801:Humans; D007700:Kinetics; D051379:Mice; D009389:Neovascularization, Pathologic; D011485:Protein Binding; D020033:Protein Isoforms; D012984:Software; D042461:Vascular Endothelial Growth Factor A / Q000737:chemistry*
chemical_list: D020033:Protein Isoforms; C467484:VEGFA protein, human; D042461:Vascular Endothelial Growth Factor A; C467480:vascular endothelial growth factor A, mouse