title: Glutamate racemization and catabolism in Fusobacterium varium.
abstract: The pathways of glutamate catabolism in the anaerobic bacterium Fusobacterium varium, grown on complex, undefined medium and chemically defined, minimal medium, were investigated using specifically labelled (13)C-glutamate. The metabolic end-products acetate and butyrate were isolated from culture fluids and derivatized for analysis by nuclear magnetic resonance and mass spectrometry. On complex medium, labels from L-[1-(13)C]glutamate and L-[4-(13)C]glutamate were incorporated into C1 of acetate and equally into C1/C3 of butyrate, while label derived from L-[5-(13)C]glutamate was not incorporated. The isotopic incorporation results and the detection of glutamate mutase and 3-methylaspartate ammonia lyase in cell extracts are most consistent with the methylaspartate pathway, the best known route of glutamate catabolism in Clostridium species. When F. varium was grown on defined medium, label from L-[4-(13)C]glutamate was incorporated mainly into C4 of butyrate, demonstrating a major role for the hydroxyglutarate pathway. Upon addition of coenzyme B(12) or cobalt ion to the defined medium in replicate experiments, isotope was located equally at C1/C3 of butyrate in accord with the methylaspartate pathway. Racemization of D-glutamate and subsequent degradation of L-glutamate via the methylaspartate pathway are supported by incorporation of label into C2 of acetate and equally into C2/C4 of butyrate from D-[3-(13)C]glutamate and the detection of a cofactor-independent glutamate racemase in cell extracts. Together the results demonstrate a major role for the methylaspartate pathway of glutamate catabolism in F. varium and substantial participation of the hydroxyglutarate pathway when coenzyme B(12) is not available.
authors.affiliation: Department of Chemistry, Dalhousie University, Halifax, Nova Scotia, Canada.
authors.forename: Mohammad
authors.initials: M
authors.lastname: Ramezani
authors.forename: Kelly L
authors.initials: KL
authors.lastname: Resmer
authors.forename: Robert L
authors.initials: RL
authors.lastname: White
mesh_terms: D019342:Acetic Acid / Q000737:chemistry / Q000302:isolation & purification / Q000378:metabolism; D000591:Amino Acid Isomerases / Q000378:metabolism; D000642:Ammonia-Lyases / Q000737:chemistry / Q000378:metabolism; D001426:Bacterial Proteins; D002087:Butyrates / Q000737:chemistry / Q000302:isolation & purification / Q000378:metabolism; D002247:Carbon Isotopes; D002851:Chromatography, High Pressure Liquid; D003035:Cobalt / Q000378:metabolism; D003038:Cobamides / Q000378:metabolism; D005673:Fusobacterium / Q000201:enzymology / Q000378:metabolism*; D018698:Glutamic Acid / Q000737:chemistry* / Q000378:metabolism*; D005977:Glutarates; D019751:Intramolecular Transferases / Q000737:chemistry / Q000378:metabolism; D007700:Kinetics; D009682:Magnetic Resonance Spectroscopy; D013058:Mass Spectrometry; D008970:Molecular Weight; D016202:N-Methylaspartate; D013237:Stereoisomerism
chemical_list: D001426:Bacterial Proteins; D002087:Butyrates; D002247:Carbon Isotopes; D003038:Cobamides; D005977:Glutarates; C019417:alpha-hydroxyglutarate; D003035:Cobalt; D018698:Glutamic Acid; D016202:N-Methylaspartate; D000642:Ammonia-Lyases; C034881:methylaspartate ammonia-lyase; D000591:Amino Acid Isomerases; D019751:Intramolecular Transferases; C021570:methylaspartate mutase; C000913:cobamamide; D019342:Acetic Acid