title: Computational evidence for the role of Arabidopsis thaliana UVR8 as UV-B photoreceptor and identification of its chromophore amino acids.
abstract: A homology model of the Arabidopsis thaliana UV resistance locus 8 (UVR8) protein is presented herein, showing a seven-bladed β-propeller conformation similar to the globular structure of RCC1. The UVR8 amino acid sequence contains a very high amount of conserved tryptophans, and the homology model shows that seven of these tryptophans cluster at the 'top surface' of the UVR8 protein where they are intermixed with positive residues (mainly arginines) and a couple of tyrosines. Quantum chemical calculations of excitation spectra of both a large cluster model involving all twelve above-mentioned residues and smaller fragments thereof reveal that absorption maxima appearing in the 280-300 nm range for the full cluster result from interactions between the central tryptophans and surrounding arginines. This observation coincides with the published experimentally measured action spectrum for the UVR8-dependent UV-B stimulation of HY5 transcription in mature A. thaliana leaf tissue. In total these findings suggest that UVR8 has in fact in itself the ability to be an ultraviolet-B photoreceptor in plants.
authors.affiliation: School of Chemistry, National University of Ireland-Galway, Galway, Ireland.
authors.forename: Min
authors.initials: M
authors.lastname: Wu
authors.forename: Elin
authors.initials: E
authors.lastname: Grahn
authors.forename: Leif A
authors.initials: LA
authors.lastname: Eriksson
authors.forename: Ake
authors.initials: A
authors.lastname: Strid
mesh_terms: D000042:Absorption; D000595:Amino Acid Sequence; D000596:Amino Acids; D017360:Arabidopsis / Q000378:metabolism* / Q000502:physiology / Q000528:radiation effects; D029681:Arabidopsis Proteins / Q000737:chemistry / Q000378:metabolism*; D002868:Chromosomal Proteins, Non-Histone / Q000737:chemistry / Q000378:metabolism*; D008958:Models, Molecular; D008969:Molecular Sequence Data; D055519:Photoreceptors, Plant / Q000737:chemistry / Q000378:metabolism*; D010858:Pigmentation; D011487:Protein Conformation; D016415:Sequence Alignment; D017386:Sequence Homology, Amino Acid; D013057:Spectrum Analysis; D014466:Ultraviolet Rays
chemical_list: D000596:Amino Acids; D029681:Arabidopsis Proteins; D002868:Chromosomal Proteins, Non-Histone; D055519:Photoreceptors, Plant; C525052:Uvr8 protein, Arabidopsis