title: Proteomic analysis of the coagulation reaction in plasma and whole blood using PROTOMAP.
abstract: Proteases are critical in many physiological processes and the human genome encodes for 566 predicted proteolytic enzymes. Therefore, there is great interest in identifying and characterizing physiologic protease-substrate relationships. The coagulation cascade is a well-described network of serine proteases. However, new interactions of the coagulation cascade with other biological pathways have been discovered only recently. Therefore, we hypothesized that a non-biased protease degradomics analysis of the physiologic coagulation reaction would identify new interactions between the coagulation cascade and other pathways. We used the recently described PROTOMAP technique to profile the complete coagulation degradome. This analysis detected virtually all of the proteins of the coagulation cascade and identified a majority of the expected proteolytic events, suggesting significant coverage of the coagulation degradome. Multiple potential new proteolytic cleavages were detected, including two of transmembrane proteins that may be shed from the surface of blood cells. In addition, this analysis was able to identify several new potentially secreted proteins. A significant majority of the newly identified events were of proteins involved in innate immunity (complement and inflammation). This highlights potential new areas of crosstalk between these linked systems. Future studies will elucidate the details and functional consequences of these proteolytic events during coagulation.
authors.affiliation: Department of Chemical Physiology, The Center for Physiological Proteomics, The Scripps Research Institute, La Jolla, CA 92037, USA.
authors.forename: Sherry
authors.initials: S
authors.lastname: Niessen
authors.forename: Heather
authors.initials: H
authors.lastname: Hoover
authors.forename: Andrew J
authors.initials: AJ
authors.lastname: Gale
mesh_terms: D001777:Blood Coagulation / Q000235:genetics; D015153:Blotting, Western; D002853:Chromatography, Liquid; D003165:Complement System Proteins / Q000235:genetics / Q000378:metabolism*; D004591:Electrophoresis, Polyacrylamide Gel; D006801:Humans; D013058:Mass Spectrometry; D008565:Membrane Proteins / Q000235:genetics / Q000378:metabolism*; D010446:Peptide Fragments / Q000032:analysis* / Q000737:chemistry; D010447:Peptide Hydrolases / Q000235:genetics / Q000378:metabolism*; D010449:Peptide Mapping / Q000379:methods*; D010949:Plasma / Q000737:chemistry / Q000201:enzymology*; D040901:Proteomics / Q000379:methods*; D013379:Substrate Specificity; D014357:Trypsin / Q000378:metabolism
chemical_list: D008565:Membrane Proteins; D010446:Peptide Fragments; D003165:Complement System Proteins; D010447:Peptide Hydrolases; D014357:Trypsin