title: PredUs: a web server for predicting protein interfaces using structural neighbors.
abstract: We describe PredUs, an interactive web server for the prediction of protein-protein interfaces. Potential interfacial residues for a query protein are identified by 'mapping' contacts from known interfaces of the query protein's structural neighbors to surface residues of the query. We calculate a score for each residue to be interfacial with a support vector machine. Results can be visualized in a molecular viewer and a number of interactive features allow users to tailor a prediction to a particular hypothesis. The PredUs server is available at: http://wiki.c2b2.columbia.edu/honiglab_public/index.php/Software:PredUs.
authors: Department of Biochemistry and Molecular Biophysics, Center for Computational Biology and Bioinformatics, Howard Hughes Medical Institute, Columbia University, 1130 St. Nicholas Avenue, Room 815, New York, NY 10032, USA.
authors: Qiangfeng Cliff
authors: QC
authors: Zhang
authors: Lei
authors: L
authors: Deng
authors: Markus
authors: M
authors: Fisher
authors: Jihong
authors: J
authors: Guan
authors: Barry
authors: B
authors: Honig
authors: Donald
authors: D
authors: Petrey
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