title: DFT characterization of key intermediates in thiols oxidation catalyzed by amavadin.
abstract: Amavadin is an unusual octa-coordinated V(IV) complex isolated from Amanita muscaria mushrooms. The outer-sphere catalytic properties of such a complex toward several oxidation reactions are well known. Nevertheless, a remarkable example exists, in which the V(V) (d(0)) oxidized form of amavadin is able to electro-catalyze the oxidation of some thiols to the corresponding disulfides through an inner-sphere mechanism (Guedes da Silva et al. J. Am. Chem. Soc.1996, 118, 7568-7573.) The reaction mechanism implies the formation of an amavadin-substrate intermediate, whose half-life is about 0.3 s. By means of Density Functional Theory (DFT) computations and Quantum Theory of Atoms in Molecules (QTAIM) analysis of the electron density, we have first characterized the stereoelectronic features of the V(IV) (inactive) and V(V) (active) states of amavadin. Then, the formation of the V(V) complex with methyl mercaptoacetate (MMA), which has been chosen as a prototypical substrate, has been characterized both thermodynamically and kinetically. DFT results reveal that protonation of V(V) amavadin at a carboxylate oxygen not directly involved in the V coordination, favors MMA binding into the first coordination sphere of vanadium, by substitution of the amavadin carboxylate oxygen with that of the substrate and formation of an S-HO hydrogen bond interaction. The latter interaction can promote SH deprotonation and binding of the thiolate group to vanadium. The kinetic and thermodynamic feasibility of the V(V)-MMA intermediates formation is in agreement, along with electrochemical experimental data, also with the biological role exerted by amavadin. Finally, the presence of an ester functional group as an essential requisite for MMA oxidation has been rationalized.
authors.affiliation: Department of Biotechnology and Biosciences, Università degli Studi di Milano-Bicocca, Piazza della Scienza 2, 20126, Milan, Italy.
authors.forename: Luca
authors.initials: L
authors.lastname: Bertini
authors.forename: Valentina
authors.initials: V
authors.lastname: Barbieri
authors.forename: Piercarlo
authors.initials: P
authors.lastname: Fantucci
authors.forename: Luca
authors.initials: L
authors.lastname: De Gioia
authors.forename: Giuseppe
authors.initials: G
authors.lastname: Zampella
mesh_terms: D000409:Alanine / Q000031:analogs & derivatives* / Q000737:chemistry; D000545:Amanita / Q000737:chemistry; D002384:Catalysis; D056831:Coordination Complexes / Q000737:chemistry; D006877:Hydroxamic Acids / Q000737:chemistry*; D007700:Kinetics; D008968:Molecular Conformation; D010084:Oxidation-Reduction; D011789:Quantum Theory; D013438:Sulfhydryl Compounds / Q000737:chemistry*; D013816:Thermodynamics; D013864:Thioglycolates / Q000737:chemistry
chemical_list: D056831:Coordination Complexes; D006877:Hydroxamic Acids; C502921:N-hydroxyimino-2,2'-dipropionic acid; D013438:Sulfhydryl Compounds; D013864:Thioglycolates; C037474:methyl thioglycolate; D000409:Alanine