title: GATA4 specific nonsynonymous single-nucleotide polymorphisms in congenital heart disease patients of Mysore, India.
abstract: Congenital heart disease (CHD) is the most common type of birth defect, affecting 1% of all live births. The recent exponential increase in the knowledge of medical genetics has revolutionized the understanding of CHDs during the past few decades. GATA4, a transcription factor, is involved in heart development. There are many contradictory reports on involvement of single-nucleotide polymorphisms (SNPs) of GATA4 in the manifestation of CHD. In view of this, an attempt has been made to analyze the known SNPs of GATA4 in Mysore patients with CHD. Of the 308 CHD patients recruited, 100 were screened for SNPs of GATA4 by MassARRAY, which identified 11 SNPs, of which 6 were found in both CHD cases and controls. The other 5 SNPs, c.278G>C (G93A), c.1207C>A (L403M), c.1232C>T (A411V), c.1295T>C (L432S), and c.1180C>G (P394A), were found only in CHD patients. Secondary structure analysis revealed that mutant proteins with the SNPs G93A, L403M, and L432S showed structural changes in their helix, sheet, and turn. Thus, these findings suggest the involvement of specific SNPs of GATA4 in the manifestation of CHD, reported for the first time in an Indian scenario. However, screening for a larger number of CHD patients would help us to establish genotype-phenotype correlation.
authors.affiliation: Genomics Laboratory, Department of Studies in Zoology, University of Mysore, Mysore, India.
authors.forename: Sosalagere M
authors.initials: SM
authors.lastname: Dinesh
authors.forename: Kusuma
authors.initials: K
authors.lastname: Lingaiah
authors.forename: Mysore R
authors.initials: MR
authors.lastname: Savitha
authors.forename: Balasundaram
authors.initials: B
authors.lastname: Krishnamurthy
authors.forename: Doddaiah
authors.initials: D
authors.lastname: Narayanappa
authors.forename: Nallur B
authors.initials: NB
authors.lastname: Ramachandra
mesh_terms: D044466:Asian People / Q000235:genetics; D016022:Case-Control Studies; D050991:GATA4 Transcription Factor / Q000737:chemistry / Q000235:genetics*; D005787:Gene Frequency; D056726:Genetic Association Studies; D020022:Genetic Predisposition to Disease; D005820:Genetic Testing; D006330:Heart Defects, Congenital / Q000235:genetics*; D006801:Humans; D007194:India; D020641:Polymorphism, Single Nucleotide; D017433:Protein Structure, Secondary / Q000235:genetics
chemical_list: D050991:GATA4 Transcription Factor; C484170:GATA4 protein, human