title: Simplified MPN method for enumeration of soil naphthalene degraders using gaseous substrate.
abstract: We describe a simplified microplate most-probable-number (MPN) procedure to quantify the bacterial naphthalene degrader population in soil samples. In this method, the sole substrate naphthalene is dosed passively via gaseous phase to liquid medium and the detection of growth is based on the automated measurement of turbidity using an absorbance reader. The performance of the new method was evaluated by comparison with a recently introduced method in which the substrate is dissolved in inert silicone oil and added individually to each well, and the results are scored visually using a respiration indicator dye. Oil-contaminated industrial soil showed slightly but significantly higher MPN estimate with our method than with the reference method. This suggests that gaseous naphthalene was dissolved in an adequate concentration to support the growth of naphthalene degraders without being too toxic. The dosing of substrate via gaseous phase notably reduced the work load and risk of contamination. The result scoring by absorbance measurement was objective and more reliable than measurement with indicator dye, and it also enabled further analysis of cultures. Several bacterial genera were identified by cloning and sequencing of 16S rRNA genes from the MPN wells incubated in the presence of gaseous naphthalene. In addition, the applicability of the simplified MPN method was demonstrated by a significant positive correlation between the level of oil contamination and the number of naphthalene degraders detected in soil.
authors.affiliation: Department of Food and Environmental Sciences, University of Helsinki, Helsinki, Finland. kaisa.wallenius@helsinki.fi
authors.forename: Kaisa
authors.initials: K
authors.lastname: Wallenius
authors.forename: Kaisa
authors.initials: K
authors.lastname: Lappi
authors.forename: Anu
authors.initials: A
authors.lastname: Mikkonen
authors.forename: Annika
authors.initials: A
authors.lastname: Wickström
authors.forename: Anu
authors.initials: A
authors.lastname: Vaalama
authors.forename: Taru
authors.initials: T
authors.lastname: Lehtinen
authors.forename: Leena
authors.initials: L
authors.lastname: Suominen
mesh_terms: D000333:Aeromonas / Q000235:genetics / Q000302:isolation & purification / Q000378:metabolism*; D015373:Bacterial Typing Techniques; D001673:Biodegradation, Environmental; D015169:Colony Count, Microbial; D042621:Comamonadaceae / Q000235:genetics / Q000302:isolation & purification / Q000378:metabolism*; D004785:Environmental Pollutants / Q000378:metabolism; D005740:Gases; D007202:Indicators and Reagents; D007219:Industrial Oils; D009281:Naphthalenes / Q000378:metabolism*; D011336:Probability; D011549:Pseudomonas / Q000235:genetics / Q000302:isolation & purification / Q000378:metabolism*; D012329:RNA, Bacterial / Q000235:genetics; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D012987:Soil / Q000737:chemistry; D012988:Soil Microbiology
chemical_list: D004785:Environmental Pollutants; D005740:Gases; D007202:Indicators and Reagents; D009281:Naphthalenes; D012329:RNA, Bacterial; D012336:RNA, Ribosomal, 16S; D012987:Soil; C031721:naphthalene