title: Diversity and abundance of ammonia-oxidizing archaea and bacteria in polluted mangrove sediment.
abstract: Ammonia oxidation by microorganisms is a critical process in the nitrogen cycle. Recent research results show that ammonia-oxidizing archaea (AOA) are both abundant and diverse in a range of ecosystems. In this study, we examined the abundance and diversity of AOA and ammonia-oxidizing beta-proteobacteria (AOB) in estuarine sediments in Hong Kong for two seasons using the ammonia monooxygenase A subunit gene (amoA) as molecular biomarker. Relationships between diversity and abundance of AOA and AOB and physicochemical parameters were also explored. AOB were more diverse but less abundant than AOA. A few phylogenetically distinct amoA gene clusters were evident for both AOA and AOB from the mangrove sediment. Pearson moment correlation analysis and canonical correspondence analysis (CCA) were used to explore physicochemical parameters potentially important to AOA and AOB. Metal concentrations were proposed to contribute potentially to the distributions of AOA while total phosphorus (TP) was correlated to the distributions of AOB. Quantitative PCR estimates indicated that AOA were more abundant than AOB in all samples, but the ratio of AOA/AOB (from 1.8 to 6.3) was smaller than most other studies by one to two orders. The abundance of AOA or AOB was correlated with pH and temperature while the AOA/AOB ratio was with the concentrations of ammonium. Several physicochemical factors, rather than any single one, affect the distribution patterns suggesting that a combination of factors is involved in shaping the dynamics of AOA and AOB in the mangrove ecosystem.
authors.affiliation: School of Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, China.
authors.forename: Huiluo
authors.initials: H
authors.lastname: Cao
authors.forename: Meng
authors.initials: M
authors.lastname: Li
authors.forename: Yiguo
authors.initials: Y
authors.lastname: Hong
authors.forename: Ji-Dong
authors.initials: JD
authors.lastname: Gu
mesh_terms: D000641:Ammonia / Q000378:metabolism*; D001105:Archaea / Q000737:chemistry / Q000145:classification / Q000235:genetics / Q000302:isolation & purification*; D020562:Betaproteobacteria / Q000737:chemistry / Q000145:classification / Q000235:genetics / Q000302:isolation & purification*; D044822:Biodiversity; D015415:Biomarkers / Q000737:chemistry; D058448:Biota; D003001:Cloning, Molecular; D004777:Environment; D004783:Environmental Microbiology; D004787:Environmental Pollution; D019766:Genes, Archaeal; D005798:Genes, Bacterial; D019015:Geologic Sediments / Q000032:analysis / Q000737:chemistry / Q000382:microbiology*; D006723:Hong Kong; D006863:Hydrogen-Ion Concentration; D008670:Metals / Q000737:chemistry; D005810:Multigene Family; D010084:Oxidation-Reduction; D010088:Oxidoreductases / Q000235:genetics; D010758:Phosphorus / Q000737:chemistry; D010802:Phylogeny; D000644:Quaternary Ammonium Compounds / Q000737:chemistry; D043982:Rhizophoraceae; D012621:Seasons; D013045:Species Specificity; D013696:Temperature
chemical_list: D015415:Biomarkers; D008670:Metals; D000644:Quaternary Ammonium Compounds; D010758:Phosphorus; D000641:Ammonia; D010088:Oxidoreductases; C045582:ammonia monooxygenase