title: The modified castor bean catalase intron is incompletely spliced in tobacco and Arabidopsis.
abstract: In an attempt to insert the modified castor bean catalase intron (mCBC intron) into the coding sequence of the Cre recombinase gene, we found that the mCBC intron was not completely spliced from the resulting iCre gene in tobacco and Arabidopsis. Sequencing and allele-specific PCR analyses indicated that six nucleotides (UUACAG) at the 3' terminus of the mCBC intron were retained in the mature mRNA of the iCre gene. Moreover, the mCBC intron was incompletely spliced from the Gus gene in pCAMBIA vectors. A mutational analysis of the mCBC intron demonstrated that the incomplete splicing was due to an artificial 3' splice site introduced by the insertion of an adenine, which created a TAG (stop) codon near the 3' splice site of the original CBC intron. Deletion of the inserted adenine or the six nucleotides that were retained from the mCBC intron led to the complete removal of the intron from the resulting iCre2 and iCre3 genes. Thus, in this study, we not only characterized the incomplete splicing event of the mCBC intron in tobacco and Arabidopsis, but also reported the construction of two intron-containing Cre recombinase genes that are useful for plant biotechnology applications.
authors.affiliation: College of Life Sciences, Peking University, Beijing 100871, China.
authors.forename: Hong
authors.initials: H
authors.lastname: Ma
authors.forename: Zhongping
authors.initials: Z
authors.lastname: Lin
authors.forename: Yuanlei
authors.initials: Y
authors.lastname: Hu
mesh_terms: D017360:Arabidopsis / Q000201:enzymology / Q000235:genetics*; D001483:Base Sequence; D002367:Ricinus communis / Q000201:enzymology / Q000235:genetics*; D002374:Catalase / Q000235:genetics*; D005966:Glucuronidase / Q000235:genetics; D019426:Integrases / Q000235:genetics; D007438:Introns / Q000235:genetics; D008969:Molecular Sequence Data; D018515:Plant Leaves / Q000235:genetics; D010940:Plant Proteins / Q000235:genetics; D022821:RNA Splice Sites / Q000235:genetics; D012326:RNA Splicing / Q000235:genetics*; D012333:RNA, Messenger / Q000235:genetics*; D017422:Sequence Analysis, DNA; D014026:Nicotiana / Q000201:enzymology / Q000235:genetics*
chemical_list: D010940:Plant Proteins; D022821:RNA Splice Sites; D012333:RNA, Messenger; D002374:Catalase; C045073:Cre recombinase; D019426:Integrases; D005966:Glucuronidase