title: Reduction of the virtual space for coupled-cluster excitation energies of large molecules and embedded systems.
abstract: We investigate how the reduction of the virtual space affects coupled-cluster excitation energies at the approximate singles and doubles coupled-cluster level (CC2). In this reduced-virtual-space (RVS) approach, all virtual orbitals above a certain energy threshold are omitted in the correlation calculation. The effects of the RVS approach are assessed by calculations on the two lowest excitation energies of 11 biochromophores using different sizes of the virtual space. Our set of biochromophores consists of common model systems for the chromophores of the photoactive yellow protein, the green fluorescent protein, and rhodopsin. The RVS calculations show that most of the high-lying virtual orbitals can be neglected without significantly affecting the accuracy of the obtained excitation energies. Omitting all virtual orbitals above 50 eV in the correlation calculation introduces errors in the excitation energies that are smaller than 0.1 eV. By using a RVS energy threshold of 50 eV, the CC2 calculations using triple-ζ basis sets (TZVP) on protonated Schiff base retinal are accelerated by a factor of 6. We demonstrate the applicability of the RVS approach by performing CC2/TZVP calculations on the lowest singlet excitation energy of a rhodopsin model consisting of 165 atoms using RVS thresholds between 20 eV and 120 eV. The calculations on the rhodopsin model show that the RVS errors determined in the gas-phase are a very good approximation to the RVS errors in the protein environment. The RVS approach thus renders purely quantum mechanical treatments of chromophores in protein environments feasible and offers an ab initio alternative to quantum mechanics/molecular mechanics separation schemes.
authors.affiliation: Institut für Physikalische Chemie, Karlsruher Institut für Technologie, Kaiserstrasse 12, 76131 Karlsruhe, Germany. Robert.Send@kit.edu
authors.forename: Robert
authors.initials: R
authors.lastname: Send
authors.forename: Ville R I
authors.initials: VR
authors.lastname: Kaila
authors.forename: Dage
authors.initials: D
authors.lastname: Sundholm
mesh_terms: D001426:Bacterial Proteins / Q000737:chemistry; D001593:Benzyl Compounds / Q000737:chemistry*; D016000:Cluster Analysis; D003373:Coumaric Acids / Q000737:chemistry*; D004735:Energy Transfer; D049452:Green Fluorescent Proteins / Q000737:chemistry; D048288:Imidazolines / Q000737:chemistry*; D008956:Models, Chemical; D056004:Molecular Dynamics Simulation; D020283:Photoreceptors, Microbial / Q000737:chemistry; D011789:Quantum Theory; D012172:Retinaldehyde / Q000737:chemistry*; D012243:Rhodopsin / Q000737:chemistry
chemical_list: D001426:Bacterial Proteins; D001593:Benzyl Compounds; D003373:Coumaric Acids; D048288:Imidazolines; D020283:Photoreceptors, Microbial; C529028:p-hydroxybenzylideneimidazolinone; C050162:photoactive yellow protein, Bacteria; D049452:Green Fluorescent Proteins; D012243:Rhodopsin; D012172:Retinaldehyde