title: Vibrational assignments, normal coordinate analysis, B3LYP calculations and conformational analysis of methyl-5-amino-4-cyano-3-(methylthio)-1H-pyrazole-1-carbodithioate.
abstract: The Raman and infrared spectra of solid methyl-5-amino-4-cyano-3-(methylthio)-1H-pyrazole-1-carbodithioate (MAMPC, C7H8N4S3) were measured in the spectral range of 3700-100 cm(-1) and 4000-200 cm(-1) with a resolution of 4 and 0.5 cm(-1), respectively. Room temperature 13C NMR and (1)H NMR spectra from room temperature down to -60 °C were also recorded. As a result of internal rotation around C-N and/or C-S bonds, eighteen rotational isomers are suggested for the MAMPC molecule (Cs symmetry). DFT/B3LYP and MP2 calculations were carried out up to 6-311++G(d,p) basis sets to include polarization and diffusion functions. The results favor conformer 1 in the solid (experimentally) and gaseous (theoretically) phases. For conformer 1, the two -CH3 groups are directed towards the nitrogen atoms (pyrazole ring) and CS, while the -NH2 group retains sp2 hybridization and C-CN bond is quasi linear. To support NMR spectral assignments, chemical shifts (δ) were predicted at the B3LYP/6-311+G(2d,p) level using the method of Gauge-Invariant Atomic Orbital (GIAO) method. Moreover, the solvent effect was included via the Polarizable Continuum Model (PCM). Additionally, both infrared and Raman spectra were predicted using B3LYP/6-31G(d) calculations. The recorded vibrational, 1H and 13C NMR spectral data favors conformer 1 in both the solid phase and in solution. Aided by normal coordinate analysis and potential energy distributions, confident vibrational assignments for observed bands have been proposed. Moreover, the CH3 barriers to internal rotations were investigated. The results are discussed herein are compared with similar molecules whenever appropriate.
authors.affiliation: Department of Chemistry, Al-Azhar University (Men's Campus), Nasr City 11884, Cairo, Egypt. tarek_ama@hotmail.com
authors.forename: Tarek A
authors.initials: TA
authors.lastname: Mohamed
authors.forename: Ali M
authors.initials: AM
authors.lastname: Hassan
authors.forename: Usama A
authors.initials: UA
authors.lastname: Soliman
authors.forename: Wajdi M
authors.initials: WM
authors.lastname: Zoghaib
authors.forename: John
authors.initials: J
authors.lastname: Husband
authors.forename: Saber M
authors.initials: SM
authors.lastname: Hassan
mesh_terms: D009682:Magnetic Resonance Spectroscopy; D008968:Molecular Conformation; D015394:Molecular Structure; D009570:Nitriles / Q000737:chemistry*; D011720:Pyrazoles / Q000737:chemistry*; D013055:Spectrophotometry, Infrared; D013059:Spectrum Analysis, Raman; D013237:Stereoisomerism; D013816:Thermodynamics; D013859:Thiocarbamates / Q000737:chemistry*; D014732:Vibration
chemical_list: D009570:Nitriles; D011720:Pyrazoles; D013859:Thiocarbamates; C568109:methyl-5-amino-4-cyano-3-(methylthio)-1H-pyrazole-1-carbodithioate; C031280:pyrazole