title: Establishment of stable Huh-7 cell lines expressing various hepatitis C virus genotype 3a protein: an in-vitro testing system for novel anti-HCV drugs.
abstract: BACKGROUND
  Hepatitis C virus (HCV) infection is the leading cause of chronic hepatitis which progresses to hepatocellular carcinoma (HCC) afflicting > 170 million people worldwide. HCV 3a is the most common genotype (about 70% of all genotypes) circulating in Pakistan. Expression of HCV individual gene of 3a would facilitate therapeutic and vaccines strategies against chronic HCV and liver Cirrhosis. The aim of the present study was the establishment of stable Huh-7 cell lines expressing structural and non structural proteins of HCV Genotype 3a Pakistani isolate obtained from chronic HCV patients.
  
  
  METHODS
  Blood samples were obtained from chronic HCV-3a positive patients. HCV individual genes were amplified using PCR with gene specific primers having restriction sites. These gene amplicons were cloned in mammalian expression vector PcDNA3.1+. Huh-7 cell lines were transfected with these constructed plasmids having structural or non-structural HCV genes in confluent cells with lipofectamine. Positive clones were selected with G418 and then confirmed by genome PCR. Subsequently, transcription and expression of the integrated genes were demonstrated by RT-PCR, sequencing and Western blot analysis.
  
  
  RESULTS
  We successfully cloned and express five HCV-3a genes in PcDNA3.1+ mammalian expression vector. Results of western blot and sequencing PCR confirmed the stable expression of these five genes.
  
  
  CONCLUSIONS
  The stable cell-lines expressing HCV-3a individual genes would be a useful tool to investigate the role of various HCV proteins on HCV disease outcome and testing of new therapeutic strategies against HCV.
authors.affiliation: Molecular Virology Laboratory, National Centre of Excellence in Molecular Biology, 87-West Canal Bank Road ,Thokar Niaz Baig, Lahore-53700, University of the Punjab, Lahore, Pakistan.
authors.forename: Sadia
authors.initials: S
authors.lastname: Butt
authors.affiliation: Molecular Virology Laboratory, National Centre of Excellence in Molecular Biology, 87-West Canal Bank Road ,Thokar Niaz Baig, Lahore-53700, University of the Punjab, Lahore, Pakistan.
authors.forename: Muhammad
authors.initials: M
authors.lastname: Idrees
authors.affiliation: Molecular Virology Laboratory, National Centre of Excellence in Molecular Biology, 87-West Canal Bank Road ,Thokar Niaz Baig, Lahore-53700, University of the Punjab, Lahore, Pakistan.
authors.forename: Irshad-Ur
authors.initials: IU
authors.lastname: Rehman
authors.affiliation: Molecular Virology Laboratory, National Centre of Excellence in Molecular Biology, 87-West Canal Bank Road ,Thokar Niaz Baig, Lahore-53700, University of the Punjab, Lahore, Pakistan.
authors.forename: Liaqat
authors.initials: L
authors.lastname: Ali
authors.affiliation: Molecular Virology Laboratory, National Centre of Excellence in Molecular Biology, 87-West Canal Bank Road ,Thokar Niaz Baig, Lahore-53700, University of the Punjab, Lahore, Pakistan.
authors.forename: Abrar
authors.initials: A
authors.lastname: Hussain
authors.affiliation: Molecular Virology Laboratory, National Centre of Excellence in Molecular Biology, 87-West Canal Bank Road ,Thokar Niaz Baig, Lahore-53700, University of the Punjab, Lahore, Pakistan.
authors.forename: Muhammad
authors.initials: M
authors.lastname: Ali
authors.affiliation: Molecular Virology Laboratory, National Centre of Excellence in Molecular Biology, 87-West Canal Bank Road ,Thokar Niaz Baig, Lahore-53700, University of the Punjab, Lahore, Pakistan.
authors.forename: Naveed
authors.initials: N
authors.lastname: Ahmed
authors.affiliation: Molecular Virology Laboratory, National Centre of Excellence in Molecular Biology, 87-West Canal Bank Road ,Thokar Niaz Baig, Lahore-53700, University of the Punjab, Lahore, Pakistan.
authors.forename: Sana
authors.initials: S
authors.lastname: Saleem
authors.affiliation: Molecular Virology Laboratory, National Centre of Excellence in Molecular Biology, 87-West Canal Bank Road ,Thokar Niaz Baig, Lahore-53700, University of the Punjab, Lahore, Pakistan.
authors.forename: Madiha
authors.initials: M
authors.lastname: Fayyaz