title: ClickMD: an intuitive web-oriented molecular dynamics platform.
abstract: BACKGROUND
  Molecular dynamics (MD) simulations are broadly used to reproduce protein motions at an atomic level of detail. Running MD simulations is generally considered an expert-driven task.
  
  
  CONCLUSIONS
  ClickMD provides an integrated web-oriented platform for processing and analyzing the time-dependent behavior of a biomolecular system in an MD workflow. ClickMD is freely available online and can be easily integrated into the drug-design process, in particular in combination with molecular docking simulations.
  
  
  CONCLUSIONS
  ClickMD has the potential to reduce the shuffling among various software applications and to facilitate the seamless processing of the MD trajectories.
authors.affiliation: Pharmaceutical Biochemistry Group, School of Pharmaceutical Sciences, SCIENCES II, Université de Genève, Quai E Ansermet, 30 1211 Genève, Switzerland.
authors.forename: Andrea
authors.initials: A
authors.lastname: Cristiani
authors.forename: Nicola
authors.initials: N
authors.lastname: Brisotto
authors.forename: Fabian Chatwin
authors.initials: FC
authors.lastname: Cedrati
authors.forename: Matteo
authors.initials: M
authors.lastname: Floris
authors.forename: Leonardo
authors.initials: L
authors.lastname: Scapozza
authors.forename: Stefano
authors.initials: S
authors.lastname: Moro
mesh_terms: D030562:Databases, Protein; D015195:Drug Design; D020407:Internet; D056004:Molecular Dynamics Simulation; D012984:Software