title: Genome-wide Association study using pooled DNA to identify candidate markers mediating susceptibility to postoperative nausea and vomiting.
abstract: BACKGROUND
  A family history has been established as a risk factor for postoperative nausea and vomiting (PONV), but the identities of susceptibility genes remain unknown. The goal of this study was to identify the genetic loci that may contribute to PONV susceptibility in an adult population.
  
  
  METHODS
  The authors performed a genome-wide association study involving pooling of DNA obtained from 122 patients with severe PONV and 129 matched controls. Each pool was hybridized to a single nucleotide polymorphism (SNP) microarray, and probe intensity was used to predict allele frequency. Differences in allele frequency between SNP in the PONV and control groups were ranked after accounting for the pooling error. The highest ranking SNPs were selected for individual genotyping in the subjects from whom the DNA pool was comprised and in the new verification cohort consisting of 208 subjects (104 PONV patients and 104 controls).
  
  
  RESULTS
  The authors identified 41 SNP targets showing substantial difference in allelic frequency between pools. These markers were first genotyped in the individual DNA samples from which the pools were comprised. The authors observed evidence for an association between PONV and 19 different loci in the genome. In the separate verification cohort, the association with PONV was observed for four SNPs. This association remained significant after correcting for multiple testing (P < 0.0023) for one SNP (rs2165870), which is located upstream of the promoter for the muscarinic acetylcholine receptor 3 subtype (CHRM3) gene.
  
  
  CONCLUSIONS
  The authors performed the genome-wide association study for PONV using pooled DNA samples. Through individual genotyping, they confirmed association of at least one SNP that is predictive of PONV susceptibility.
authors.affiliation: Perioperative Genomics Laboratory, Department of Anesthesiology, Penn State College of Medicine, Hershey, Pennsylvania, USA.
authors.forename: Piotr K
authors.initials: PK
authors.lastname: Janicki
authors.forename: Ryan
authors.initials: R
authors.lastname: Vealey
authors.forename: Jiabin
authors.initials: J
authors.lastname: Liu
authors.forename: Jeremiah
authors.initials: J
authors.lastname: Escajeda
authors.forename: Marek
authors.initials: M
authors.lastname: Postula
authors.forename: Kelli
authors.initials: K
authors.lastname: Welker
mesh_terms: D000293:Adolescent; D000328:Adult; D000368:Aged; D015331:Cohort Studies; D004247:DNA / Q000235:genetics*; D003627:Data Interpretation, Statistical; D005260:Female; D005819:Genetic Markers; D055106:Genome-Wide Association Study; D005838:Genotype; D006801:Humans; D008297:Male; D046228:Microarray Analysis; D008875:Middle Aged; D020641:Polymorphism, Single Nucleotide; D020250:Postoperative Nausea and Vomiting / Q000453:epidemiology* / Q000235:genetics*; D044465:White People; D055815:Young Adult
chemical_list: D005819:Genetic Markers; D004247:DNA