title: Structure and function of the D-galactose network in enterobacteria.
abstract: Galactose is important for the survival and virulence of bacteria. In Escherichia coli, galactose is utilized by the Leloir pathway, which is controlled by a complex network. To shed light on the potential functions the galactose network could perform, we performed bioinformatical analysis of reference genome sequences belonging to the Enterobacteriaceae family. We found that several genomes have reduced numbers of components compared to the E. coli galactose system, suggesting that the network can be optimized for different environments. Typically, genes are removed by deletions; however, in Yersinia pestis, the galactose mutarotase (galM) gene is inactivated by a single-base-pair deletion. Lack of GalM activity indicates that the two anomers of D-galactose are used for different purposes, α-D-galactose as a carbon source and β-D-galactose for induction of UDP-galactose synthesis for biosynthetic glycosylation. We demonstrate that activity of the galM gene can be restored by different single-base-pair insertions. During the evolution of Y. pestis to become a vector-transmitted systemic pathogen, many genes were converted to pseudogenes. It is not clear whether pseudogenes are present to maintain meiotrophism or are in the process of elimination. Our results suggest that the galM pseudogene has not been deleted because its reactivation may be beneficial in certain environments.
authors.affiliation: Laboratory of Molecular Biology, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, USA.
authors.forename: Zsolt
authors.initials: Z
authors.lastname: Csiszovszki
authors.forename: Sandeep
authors.initials: S
authors.lastname: Krishna
authors.forename: László
authors.initials: L
authors.lastname: Orosz
authors.forename: Sankar
authors.initials: S
authors.lastname: Adhya
authors.forename: Szabolcs
authors.initials: S
authors.lastname: Semsey
mesh_terms: D002238:Carbohydrate Epimerases / Q000235:genetics; D004269:DNA, Bacterial / Q000235:genetics; D004755:Enterobacteriaceae / Q000235:genetics* / Q000378:metabolism*; D005690:Galactose / Q000378:metabolism*; D023281:Genomics / Q000379:methods; D006031:Glycosylation; D053858:Metabolic Networks and Pathways; D008954:Models, Biological; D011544:Pseudogenes; D015010:Yersinia pestis / Q000201:enzymology / Q000235:genetics
chemical_list: D004269:DNA, Bacterial; D002238:Carbohydrate Epimerases; C459183:galactose mutarotase; D005690:Galactose