title: Formation of m2G6 in Methanocaldococcus jannaschii tRNA catalyzed by the novel methyltransferase Trm14.
abstract: The modified nucleosides N(2)-methylguanosine and N(2)(2)-dimethylguanosine in transfer RNA occur at five positions in the D and anticodon arms, and at positions G6 and G7 in the acceptor stem. Trm1 and Trm11 enzymes are known to be responsible for several of the D/anticodon arm modifications, but methylases catalyzing post-transcriptional m(2)G synthesis in the acceptor stem are uncharacterized. Here, we report that the MJ0438 gene from Methanocaldococcus jannaschii encodes a novel S-adenosylmethionine-dependent methyltransferase, now identified as Trm14, which generates m(2)G at position 6 in tRNA(Cys). The 381 amino acid Trm14 protein possesses a canonical RNA recognition THUMP domain at the amino terminus, followed by a γ-class Rossmann fold amino-methyltransferase catalytic domain featuring the signature NPPY active site motif. Trm14 is associated with cluster of orthologous groups (COG) 0116, and most closely resembles the m(2)G10 tRNA methylase Trm11. Phylogenetic analysis reveals a canonical archaeal/bacterial evolutionary separation with 20-30% sequence identities between the two branches, but it is likely that the detailed functions of COG 0116 enzymes differ between the archaeal and bacterial domains. In the archaeal branch, the protein is found exclusively in thermophiles. More distantly related Trm14 homologs were also identified in eukaryotes known to possess the m(2)G6 tRNA modification.
authors.affiliation: Department of Chemistry and Biochemistry, University of California, Santa Barbara, CA 93106-9510, USA.
authors.forename: Sheena
authors.initials: S
authors.lastname: Menezes
authors.forename: Kirk W
authors.initials: KW
authors.lastname: Gaston
authors.forename: Kady L
authors.initials: KL
authors.lastname: Krivos
authors.forename: Ethel E
authors.initials: EE
authors.lastname: Apolinario
authors.forename: Norbert O
authors.initials: NO
authors.lastname: Reich
authors.forename: Kevin R
authors.initials: KR
authors.lastname: Sowers
authors.forename: Patrick A
authors.initials: PA
authors.lastname: Limbach
authors.forename: John J
authors.initials: JJ
authors.lastname: Perona
mesh_terms: D000595:Amino Acid Sequence; D019843:Archaeal Proteins / Q000145:classification / Q000235:genetics / Q000378:metabolism*; D001483:Base Sequence; D055162:Biocatalysis; D017015:Methanococcales / Q000201:enzymology*; D008969:Molecular Sequence Data; D010802:Phylogeny; D012343:RNA, Transfer / Q000737:chemistry / Q000378:metabolism*; D012350:RNA, Transfer, Cys / Q000737:chemistry / Q000378:metabolism; D011994:Recombinant Proteins / Q000235:genetics / Q000302:isolation & purification; D016415:Sequence Alignment; D012359:tRNA Methyltransferases / Q000145:classification / Q000235:genetics / Q000378:metabolism*
chemical_list: D019843:Archaeal Proteins; D012350:RNA, Transfer, Cys; D011994:Recombinant Proteins; D012343:RNA, Transfer; D012359:tRNA Methyltransferases; C023196:tRNA (guanine(10)-N(2))-dimethyltransferase