title: [Analysis of methanogenic community of anaerobic granular sludge based on mcrA gene].
abstract: The methanogenic community in anaerobic granular sludge from a full-scale UASB treating avernectin wastewater was analyzed based on mcrA gene, compared to 16S rRNA gene. The results indicated that the diversity indices of methanogenic community, including Shannon diversity index, Margalef richness index and Berger-Parker dominance index, were no difference between mcrA gene-based and 16S rRNA gene-based PCR products analysis by DGGE, although their DGGE band patterns were different, implying that the diversity analysis of methanogenic community based on mcrA genes was consistent with 16S rRNA gene. The phylogenetic analysis of dominant methanogenic populations based on these two target genes also showed resemble and Methanobacteriales and Methanosarcinales were determined to be the main orders of methanogenic populations in anaerobic granular sludge. On the other hand, the difference in phylogenetic analysis suggested simultaneously some group-specific of the two target genes. The hybridization of methanogenic community in FISH analysis based on two target genes was almost identical except a little different hybridization areas. The average relative abundance of methanogenic community was 24.25% +/- 6. 47% detected by FISH based on mcrA gene, lower than that based on 16S rRNA gene (33.42% +/- 2.34%). Then it could be concluded that the analysis of methanogenic community based on mcrA gene and 16S rRNA gene exhibited high resemblance and mcrA gene could used to be target gene for methanogenic community, as an alternative of 16S rRNA gene.
authors: School of Environmental Science and Engineering, Hebei University of Science and Technology, Shijiazhuang 050018, China. liuchun02@mails.tsinghua.edu.cn
authors: Chu
authors: C
authors: Liu
authors: Liang
authors: L
authors: Li
authors: Jun-Ke
authors: JK
authors: Ma
authors: Gen
authors: G
authors: Wu
authors: Jing-Liang
authors: JL
authors: Yang
mesh_terms: D000693:Anaerobiosis; D019149:Bioreactors / Q000382:microbiology*; D019766:Genes, Archaeal; D007559:Ivermectin / Q000031:analogs & derivatives; D019638:Methanomicrobiaceae / Q000145:classification* / Q000235:genetics / Q000378:metabolism; D017020:Methanosarcina / Q000235:genetics / Q000378:metabolism; D010088:Oxidoreductases / Q000235:genetics*; D011157:Population Dynamics; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D012722:Sewage / Q000382:microbiology*; D014865:Waste Disposal, Fluid / Q000379:methods*
chemical_list: D012336:RNA, Ribosomal, 16S; D012722:Sewage; D007559:Ivermectin; C019264:avermectin; D010088:Oxidoreductases; C021572:methyl coenzyme M reductase