title: Visualization in simulation tools: requirements and a tool specification to support the teaching of dynamic biological processes.
abstract: Simulation tools are playing an increasingly important role behind advances in the field of systems biology. However, the current generation of biological science students has either little or no experience with such tools. As such, this educational glitch is limiting both the potential use of such tools as well as the potential for tighter cooperation between the designers and users. Although some simulation tool producers encourage their use in teaching, little attempt has hitherto been made to analyze and discuss their suitability as an educational tool for noncomputing science students. In general, today's simulation tools assume that the user has a stronger mathematical and computing background than that which is found in most biological science curricula, thus making the introduction of such tools a considerable pedagogical challenge. This paper provides an evaluation of the pedagogical attributes of existing simulation tools for cell signal transduction based on Cognitive Load theory. Further, design recommendations for an improved educational simulation tool are provided. The study is based on simulation tools for cell signal transduction. However, the discussions are relevant to a broader biological simulation tool set.
authors.affiliation: Department of Biology, Norwegian University of Science and Technology, N-7491 Trondheim, Norway. katarina.jorgensen@med.uib.no
authors.forename: Katarina M
authors.initials: KM
authors.lastname: Jørgensen
authors.forename: Pauline C
authors.initials: PC
authors.lastname: Haddow
mesh_terms: D019295:Computational Biology; D003196:Computer Graphics; D003198:Computer Simulation; D003199:Computer Systems; D003194:Computer-Assisted Instruction; D006801:Humans; D008954:Models, Biological; D015398:Signal Transduction; D049490:Systems Biology / Q000193:education* / Q000706:statistics & numerical data