title: Evaluation of different species-specific PCR protocols for the detection of Vibrio tapetis.
abstract: In this study the specificity and sensitivity of three primer pairs, Jvt1-Jvt2, VtF-VtR and VtKF-VtKR, for the detection of Vibrio tapetis were evaluated in parallel using 23 V. tapetis strains isolated from different mollusc and fish species and with different geographical origin, as well as 29 representatives of related Vibrio species. The three primer pairs amplified all the V. tapetis strains, regardless of their host or geographical origin. However, with primer sets VtF-VtR and VtKF-VtKR amplification products of the expected size were obtained from chromosomal DNA of some of the non-V. tapetis bacteria tested. The sensitivity of the three PCR detection methods was also different. The detection limit obtained with primer pairs Jvt1-Jvt2 and VtF-VtR was between 1 and 10 pg DNA/PCR tube (2-20 bacterial cells per reaction). The primer set VtKF-VtKR showed a reduction of sensitivity in at least one order of magnitude. The results were highly reproducible with all primer sets when using the same thermal cycler, although some differences were observed in the results obtained in different PCR machines. Based on the findings reported here, we propose the Jvt1-Jvt2 PCR protocol as the most adequate for an accurate detection of V. tapetis in diagnostic pathology as well as in epidemiological studies of this clam pathogen.
authors.affiliation: Departamento de Microbiología y Parasitología, CIBUS, Facultad de Biología, Universidad de Santiago de Compostela, 15782 Santiago de Compostela, Spain.
authors.forename: Sabela
authors.initials: S
authors.lastname: Balboa
authors.forename: Alejandra
authors.initials: A
authors.lastname: Doce
authors.forename: Ana L
authors.initials: AL
authors.lastname: Diéguez
authors.forename: Jesús L
authors.initials: JL
authors.lastname: Romalde
mesh_terms: D000818:Animals; D004269:DNA, Bacterial / Q000302:isolation & purification; D005393:Fish Diseases / Q000175:diagnosis / Q000382:microbiology; D005399:Fishes / Q000382:microbiology; D057230:Limit of Detection; D008974:Mollusca / Q000382:microbiology; D016133:Polymerase Chain Reaction / Q000379:methods*; D011237:Predictive Value of Tests; D013045:Species Specificity; D014733:Vibrio / Q000235:genetics / Q000302:isolation & purification*; D014735:Vibrio Infections / Q000175:diagnosis* / Q000382:microbiology
chemical_list: D004269:DNA, Bacterial