title: Genome-wide association study reveals five nucleotide sequence variants for carcass traits in beef cattle.
abstract: Genetic associations of nucleotide sequence variants with carcass traits in beef cattle were investigated using a genome-wide single nucleotide polymorphism (SNP) assay. Three hundred and thirteen Korean cattle were genotyped with the Illumina BovineSNP50 BeadChip, and 39,129 SNPs from 311 animals were analysed for each carcass phenotype after filtering by quality assurance. Five sequence markers were associated with one of the meat quantity or quality traits; rs109593638 on chromosome 3 with marbling score, rs109821175 on chromosome 11 and rs110862496 on chromosome 13 with backfat thickness (BFT), and rs110228023 on chromosome 6 and rs110201414 on chromosome 16 with eye muscle area (EMA) (P < 1.27 × 10(-6) , Bonferonni P < 0.05). The ss96319521 SNP, located within a gene with functions of muscle development, dishevelled homolog 1 (DVL1), would be a desirable candidate marker. Individuals with genotype CC at this gene appeared to have increased both EMA and carcass weight. Fine-mapping would be required to refine each of the five association signals shown in the current study for future application in marker-assisted selection for genetic improvement of beef quality and quantity.
authors.affiliation: Department of Bioinformatics and Life Science, Soongsil University, Seoul, Korea.
authors.forename: Y
authors.initials: Y
authors.lastname: Kim
authors.forename: J
authors.initials: J
authors.lastname: Ryu
authors.forename: J
authors.initials: J
authors.lastname: Woo
authors.forename: J B
authors.initials: JB
authors.lastname: Kim
authors.forename: C Y
authors.initials: CY
authors.lastname: Kim
authors.forename: C
authors.initials: C
authors.lastname: Lee
mesh_terms: D048868:Adaptor Proteins, Signal Transducing / Q000235:genetics; D000818:Animals; D001823:Body Composition / Q000235:genetics* / Q000502:physiology; D002417:Cattle; D000072261:Dishevelled Proteins; D005819:Genetic Markers / Q000235:genetics*; D055106:Genome-Wide Association Study; D008460:Meat / Q000592:standards*; D010641:Phenotype; D010750:Phosphoproteins / Q000235:genetics; D020641:Polymorphism, Single Nucleotide / Q000235:genetics; D012044:Regression Analysis
chemical_list: D048868:Adaptor Proteins, Signal Transducing; D000072261:Dishevelled Proteins; D005819:Genetic Markers; D010750:Phosphoproteins