title: Construction of a cDNA library from female adult of Toxocara canis, and analysis of EST and immune-related genes expressions.
abstract: Toxocara canis is a widespread intestinal nematode parasite of dogs, which can also cause disease in humans. We employed an expressed sequence tag (EST) strategy in order to study gene-expression including development, digestion and reproduction of T. canis. ESTs provided a rapid way to identify genes, particularly in organisms for which we have very little molecular information. In this study, a cDNA library was constructed from a female adult of T. canis and 215 high-quality ESTs from 5'-ends of the cDNA clones representing 79 unigenes were obtained. The titer of the primary cDNA library was 1.83×10(6)pfu/mL with a recombination rate of 99.33%. Most of the sequences ranged from 300 to 900bp with an average length of 656bp. Cluster analysis of these ESTs allowed identification of 79 unique sequences containing 28 contigs and 51 singletons. BLASTX searches revealed that 18 unigenes (22.78% of the total) or 70 ESTs (32.56% of the total) were novel genes that had no significant matches to any protein sequences in the public databases. The rest of the 61 unigenes (77.22% of the total) or 145 ESTs (67.44% of the total) were closely matched to the known genes or sequences deposited in the public databases. These genes were classified into seven groups based on their known or putative biological functions. We also confirmed the gene expression patterns of several immune-related genes using RT-PCR examination. This work will provide a valuable resource for the further investigations in the stage-, sex- and tissue-specific gene transcription or expression.
authors.affiliation: Department of Veterinary Medicine, Rongchang Campus, Southwest University, Chongqing 402460, PR China.
authors.forename: Rongqiong
authors.initials: R
authors.lastname: Zhou
authors.forename: Qingyou
authors.initials: Q
authors.lastname: Xia
authors.forename: Hancheng
authors.initials: H
authors.lastname: Huang
authors.forename: Min
authors.initials: M
authors.lastname: Lai
authors.forename: Zhenxin
authors.initials: Z
authors.lastname: Wang
mesh_terms: D000818:Animals; D016000:Cluster Analysis; D019295:Computational Biology; D018509:DNA, Helminth / Q000737:chemistry; D004283:Dog Diseases / Q000469:parasitology; D004285:Dogs; D004587:Electrophoresis, Agar Gel; D020224:Expressed Sequence Tags / Q000737:chemistry*; D005260:Female; D015870:Gene Expression / Q000276:immunology*; D015723:Gene Library; D017238:Genes, Helminth; D007109:Immunity / Q000235:genetics; D008297:Male; D008969:Molecular Sequence Data; D020133:Reverse Transcriptase Polymerase Chain Reaction; D017166:Toxocara canis / Q000235:genetics* / Q000276:immunology / Q000502:physiology; D014120:Toxocariasis / Q000276:immunology / Q000469:parasitology*
chemical_list: D018509:DNA, Helminth