title: The InterPro BioMart: federated query and web service access to the InterPro Resource.
abstract: The InterPro BioMart provides users with query-optimized access to predictions of family classification, protein domains and functional sites, based on a broad spectrum of integrated computational models ('signatures') that are generated by the InterPro member databases: Gene3D, HAMAP, PANTHER, Pfam, PIRSF, PRINTS, ProDom, PROSITE, SMART, SUPERFAMILY and TIGRFAMs. These predictions are provided for all protein sequences from both the UniProt Knowledge Base and the UniParc protein sequence archive. The InterPro BioMart is supplementary to the primary InterPro web interface (http://www.ebi.ac.uk/interpro), providing a web service and the ability to build complex, custom queries that can efficiently return thousands of rows of data in a variety of formats. This article describes the information available from the InterPro BioMart and illustrates its utility with examples of how to build queries that return useful biological information. Database URL: http://www.ebi.ac.uk/interpro/biomart/martview.
authors.affiliation: EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK. pjones@ebi.ac.uk
authors.forename: Philip
authors.initials: P
authors.lastname: Jones
authors.forename: David
authors.initials: D
authors.lastname: Binns
authors.forename: Conor
authors.initials: C
authors.lastname: McMenamin
authors.forename: Craig
authors.initials: C
authors.lastname: McAnulla
authors.forename: Sarah
authors.initials: S
authors.lastname: Hunter
mesh_terms: D022126:Access to Information; D030562:Databases, Protein; D006801:Humans; D020407:Internet; D053858:Metabolic Networks and Pathways; D057386:Search Engine