title: Novel [NiFe]- and [FeFe]-hydrogenase gene transcripts indicative of active facultative aerobes and obligate anaerobes in earthworm gut contents.
abstract: The concomitant occurrence of molecular hydrogen (H(2)) and organic acids along the alimentary canal of the earthworm is indicative of ongoing fermentation during gut passage. Fermentative H(2) production is catalyzed by [FeFe]-hydrogenases and group 4 [NiFe]-hydrogenases in obligate anaerobes (e.g., Clostridiales) and facultative aerobes (e.g., Enterobacteriaceae), respectively, functional groups that might respond differently to contrasting redox conditions. Thus, the objectives of this study were to assess the redox potentials of the alimentary canal of Lumbricus terrestris and analyze the hydrogenase transcript diversities of H(2) producers in glucose-supplemented gut content microcosms. Although redox potentials in the core of the alimentary canal were variable on an individual worm basis, average redox potentials were similar. The lowest redox potentials occurred in the foregut and midgut regions, averaging 40 and 110 mV, respectively. Correlation plots between hydrogenase amino acid sequences and 16S rRNA gene sequences indicated that closely related hydrogenases belonged to closely related taxa, whereas distantly related hydrogenases did not necessarily belong to distantly related taxa. Of 178 [FeFe]-hydrogenase gene transcripts, 177 clustered in 12 Clostridiales-affiliated operational taxonomic units, the majority of which were indicative of heretofore unknown hydrogenases. Of 86 group 4 [NiFe]-hydrogenase gene transcripts, 79% and 21% were affiliated with organisms in the Enterobacteriaceae and Aeromonadaceae, respectively. The collective results (i) suggest that fermenters must cope with variable and moderately oxidative redox conditions along the alimentary canal, (ii) demonstrate that heretofore undetected hydrogenases are present in the earthworm gut, and (iii) corroborate previous findings implicating Clostridiaceae and Enterobacteriaceae as active fermentative taxa in earthworm gut content.
authors.affiliation: Department of Ecological Microbiology, University of Bayreuth, 95440 Bayreuth, Germany.
authors.forename: Oliver
authors.initials: O
authors.lastname: Schmidt
authors.forename: Pia K
authors.initials: PK
authors.lastname: Wüst
authors.forename: Susanne
authors.initials: S
authors.lastname: Hellmuth
authors.forename: Katharina
authors.initials: K
authors.lastname: Borst
authors.forename: Marcus A
authors.initials: MA
authors.lastname: Horn
authors.forename: Harold L
authors.initials: HL
authors.lastname: Drake
mesh_terms: D000818:Animals; D001421:Bacteria, Anaerobic / Q000145:classification / Q000201:enzymology* / Q000235:genetics; D001426:Bacterial Proteins / Q000096:biosynthesis* / Q000235:genetics; D016000:Cluster Analysis; D004269:DNA, Bacterial / Q000737:chemistry / Q000235:genetics; D004275:DNA, Ribosomal / Q000737:chemistry / Q000235:genetics; D041981:Gastrointestinal Tract / Q000737:chemistry / Q000382:microbiology; D006864:Hydrogenase / Q000096:biosynthesis* / Q000235:genetics; D008969:Molecular Sequence Data; D009835:Oligochaeta / Q000382:microbiology*; D010084:Oxidation-Reduction; D010802:Phylogeny; D012333:RNA, Messenger / Q000096:biosynthesis* / Q000235:genetics; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D017422:Sequence Analysis, DNA; D014158:Transcription, Genetic
chemical_list: D001426:Bacterial Proteins; D004269:DNA, Bacterial; D004275:DNA, Ribosomal; D012333:RNA, Messenger; D012336:RNA, Ribosomal, 16S; D006864:Hydrogenase