title: Boty-like retrotransposons in the filamentous fungus Botrytis cinerea contain the additional antisense gene brtn.
abstract: Long-terminal repeat (LTR) retrotransposons typically contain gag, pol, or gag-pol, and in some case env genes. In this work, we used data mining of the Botrytis cinerea genomic sequence and a molecular approach to identify Boty-like LTR retrotransposons in B. cinerea containing an antisense gene (brtn) between pol and the 3'-LTR. Reverse transcriptase PCR (RT-PCR) revealed that some brtn-like genes could be expressed, at least in B. cinerea T4. We conducted BLAST comparisons and conserved-domain analysis, but the function of putative BRTN is presently unknown. Boty-like LTR retrotransposons in Sclerotinia sclerotiorum, called ScscLRET and containing brtn homologs at positions similar to brtn, were detected by homology searches and data mining of the S. sclerotiorum 1980 genomic sequence. Thus, this study demonstrated that some fungal LTR retrotransposons contain additional antisense genes.
authors.affiliation: Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, PR China.
authors.forename: Ming
authors.initials: M
authors.lastname: Zhao
authors.forename: Jin Y
authors.initials: JY
authors.lastname: Zhou
authors.forename: Zhi D
authors.initials: ZD
authors.lastname: Li
authors.forename: Wei W
authors.initials: WW
authors.lastname: Song
authors.forename: Tao
authors.initials: T
authors.lastname: Gong
authors.forename: Hong
authors.initials: H
authors.lastname: Tan
mesh_terms: D016375:Antisense Elements (Genetics); D020171:Botrytis / Q000235:genetics*; D019295:Computational Biology; D004271:DNA, Fungal / Q000737:chemistry / Q000235:genetics; D005658:Fungi / Q000235:genetics; D005800:Genes, Fungal; D008969:Molecular Sequence Data; D018626:Retroelements; D017422:Sequence Analysis, DNA
chemical_list: D016375:Antisense Elements (Genetics); D004271:DNA, Fungal; D018626:Retroelements