title: Effect of storage temperature as a preanalytical variable on the lens crystallins protein quality for proteomic studies.
abstract: OBJECTIVE
  To study the effect of storage temperature on lens crystallins quality for proteomic analysis, using αA-crystallins as internal marker.
  
  
  METHODS
  Lenses were stored at -40°C, -10°C and ice for up to 10 days. Protein extracts were prepared from samples stored at -40°C and -10°C on completion of 10 days; for samples kept under ice-storage, lenses were taken out at every 24 h, extracts prepared and stored. Fresh lens extracts served as the control.
  
  
  RESULTS
  SDS-PAGE analysis of proteins from lens stored at -40°C and -10°C for 10 days did not show any appreciable change in profiles; however, two protein bands of 27 and 29 kDa disappeared from lens stored in ice. A time-course analysis showed that such changes in ice-stored lens occurred beyond six days of storage. Appearance of additional αA-crystallin fragments on 1-D and 2-D immunoblots confirmed degradation of αA-crystallins. Protein spots altered in abundance and identified by peptide mass fingerprinting include αA-, αB-, βB1-, βB2- and γ-crystallins.
  
  
  CONCLUSIONS
  For proteomic studies, quality of the starting material must be ensured to avoid erroneous and misleading interpretation of results. Under field conditions where deep freezing or immediate preparations of samples are not the options, eye lens can be transported under ice-storage for about six days without deterioration in protein quality.
authors.affiliation: Central Inland Fisheries Research Institute - Biochemistry Laboratory, Barrackpore, Kolkata, India.
authors.forename: Soma
authors.initials: S
authors.lastname: Bhattacharjee
authors.forename: Sasmita
authors.initials: S
authors.lastname: Mohanty
authors.forename: Anil P
authors.initials: AP
authors.lastname: Sharma
authors.forename: Bimal P
authors.initials: BP
authors.lastname: Mohanty
mesh_terms: D000818:Animals; D015180:Electrophoresis, Gel, Two-Dimensional / Q000379:methods; D005399:Fishes; D015151:Immunoblotting; D007908:Lens, Crystalline / Q000378:metabolism*; D009926:Organ Preservation / Q000379:methods; D020543:Proteome / Q000032:analysis / Q000276:immunology; D040901:Proteomics / Q000379:methods*; D019032:Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; D013696:Temperature; D013997:Time Factors
chemical_list: D020543:Proteome