title: The C-terminus of histone H2B is involved in chromatin compaction specifically at telomeres, independently of its monoubiquitylation at lysine 123.
abstract: Telomeric heterochromatin assembly in budding yeast propagates through the association of Silent Information Regulator (SIR) proteins with nucleosomes, and the nucleosome array has been assumed to fold into a compacted structure. It is believed that the level of compaction and gene repression within heterochromatic regions can be modulated by histone modifications, such as acetylation of H3 lysine 56 and H4 lysine 16, and monoubiquitylation of H2B lysine 123. However, it remains unclear as to whether or not gene silencing is a direct consequence of the compaction of chromatin. Here, by investigating the role of the carboxy-terminus of histone H2B in heterochromatin formation, we identify that the disorderly compaction of chromatin induced by a mutation at H2B T122 specifically hinders telomeric heterochromatin formation. H2B T122 is positioned within the highly conserved AVTKY motif of the αC helix of H2B. Heterochromatin containing the T122E substitution in H2B remains inaccessible to ectopic dam methylase with dramatically increased mobility in sucrose gradients, indicating a compacted chromatin structure. Genetic studies indicate that this unique phenotype is independent of H2B K123 ubiquitylation and Sir4. In addition, using ChIP analysis, we demonstrate that telomere structure in the mutant is further disrupted by a defect in Sir2/Sir3 binding and the resulting invasion of euchromatic histone marks. Thus, we have revealed that the compaction of chromatin per se is not sufficient for heterochromatin formation. Instead, these results suggest that an appropriately arrayed chromatin mediated by H2B C-terminus is required for SIR binding and the subsequent formation of telomeric chromatin in yeast, thereby identifying an intrinsic property of the nucleosome that is required for the establishment of telomeric heterochromatin. This requirement is also likely to exist in higher eukaryotes, as the AVTKY motif of H2B is evolutionarily conserved.
authors.affiliation: Institute of Cellular and Organismic Biology, Academia Sinica, Taipei, Taiwan.
authors.forename: Chen-Yi
authors.initials: CY
authors.lastname: Wang
authors.forename: Chia-Yin
authors.initials: CY
authors.lastname: Hua
authors.forename: Hsiang-En
authors.initials: HE
authors.lastname: Hsu
authors.forename: Chia-Ling
authors.initials: CL
authors.lastname: Hsu
authors.forename: Hsin-Yi
authors.initials: HY
authors.lastname: Tseng
authors.forename: Duncan E
authors.initials: DE
authors.lastname: Wright
authors.forename: Pang-Hung
authors.initials: PH
authors.lastname: Hsu
authors.forename: Chih-Hung
authors.initials: CH
authors.lastname: Jen
authors.forename: Chia-Yeh
authors.initials: CY
authors.lastname: Lin
authors.forename: Meng-Ying
authors.initials: MY
authors.lastname: Wu
authors.forename: Min-Daw
authors.initials: MD
authors.lastname: Tsai
authors.forename: Cheng-Fu
authors.initials: CF
authors.lastname: Kao
mesh_terms: D000107:Acetylation; D015415:Biomarkers / Q000378:metabolism; D015153:Blotting, Western; D042002:Chromatin Assembly and Disassembly; D047369:Chromatin Immunoprecipitation; D005455:Fluorescent Antibody Technique; D020869:Gene Expression Profiling; D006570:Heterochromatin / Q000235:genetics; D006657:Histones / Q000737:chemistry / Q000378:metabolism*; D008239:Lysine / Q000737:chemistry / Q000378:metabolism*; D009707:Nucleosomes / Q000235:genetics; D020411:Oligonucleotide Array Sequence Analysis; D012331:RNA, Fungal / Q000235:genetics; D012333:RNA, Messenger / Q000235:genetics; D020133:Reverse Transcriptase Polymerase Chain Reaction; D012441:Saccharomyces cerevisiae / Q000235:genetics / Q000254:growth & development / Q000378:metabolism; D038281:Silent Information Regulator Proteins, Saccharomyces cerevisiae / Q000235:genetics / Q000378:metabolism*; D016615:Telomere / Q000502:physiology*; D025801:Ubiquitin / Q000378:metabolism*; D054875:Ubiquitination
chemical_list: D015415:Biomarkers; D006570:Heterochromatin; D006657:Histones; D009707:Nucleosomes; D012331:RNA, Fungal; D012333:RNA, Messenger; D038281:Silent Information Regulator Proteins, Saccharomyces cerevisiae; D025801:Ubiquitin; D008239:Lysine