title: Dynamics of intracellular information decoding.
abstract: A variety of cellular functions are robust even to substantial intrinsic and extrinsic noise in intracellular reactions and the environment that could be strong enough to impair or limit them. In particular, of substantial importance is cellular decision-making in which a cell chooses a fate or behavior on the basis of information conveyed in noisy external signals. For robust decoding, the crucial step is filtering out the noise inevitably added during information transmission. As a minimal and optimal implementation of such an information decoding process, the autocatalytic phosphorylation and autocatalytic dephosphorylation (aPadP) cycle was recently proposed. Here, we analyze the dynamical properties of the aPadP cycle in detail. We describe the dynamical roles of the stationary and short-term responses in determining the efficiency of information decoding and clarify the optimality of the threshold value of the stationary response and its information-theoretical meaning. Furthermore, we investigate the robustness of the aPadP cycle against the receptor inactivation time and intrinsic noise. Finally, we discuss the relationship among information decoding with information-dependent actions, bet-hedging and network modularity.
authors.affiliation: Institute of Industrial Science, University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8505, Japan. tetsuya@mail.crmind.net
authors.forename: Tetsuya J
authors.initials: TJ
authors.lastname: Kobayashi
authors.forename: Atsushi
authors.initials: A
authors.lastname: Kamimura
mesh_terms: D002384:Catalysis; D002468:Cell Physiological Phenomena; D008954:Models, Biological; D010766:Phosphorylation; D015398:Signal Transduction; D013269:Stochastic Processes