title: Genome wide association studies and prion disease.
abstract: Over the last decade remarkable advances in genotyping and sequencing technology have resulted in hundreds of novel gene associations with disease. These have typically involved high frequency alleles in common diseases and with the advent of next generation sequencing, disease causing recessive mutations in rare inherited syndromes. Here we discuss the impact of these advances and other gene discovery methods in the prion diseases. Several quantitative trait loci in mouse have been mapped and their human counterparts analysed (HECTD2, CPNE8); other candidate genes regions have been chosen for functional reasons (SPRN, CTSD). Human genome wide association has been done in variant Creutzfeldt-Jakob disease (CJD) and are ongoing in larger collections of sporadic CJD with findings around, but not clearly beyond, the levels of statistical significance required in these studies (THRB-RARB, STMN2). Future work will include closer integration of animal and human genetic studies, larger and combined genome wide association, analysis of structural genetic variantion and next generation sequencing studies involving the entire coding exome or genome.
authors.affiliation: National Prion Clinic, UCLH NHS Trust, London, UK.
authors.forename: Ana
authors.initials: A
authors.lastname: Lukic
authors.forename: Simon
authors.initials: S
authors.lastname: Mead
mesh_terms: D000818:Animals; D007562:Creutzfeldt-Jakob Syndrome / Q000235:genetics; D015894:Genome, Human; D055106:Genome-Wide Association Study / Q000379:methods*; D005838:Genotype; D006801:Humans; D051379:Mice; D017096:Prion Diseases / Q000235:genetics*; D011328:Prions / Q000235:genetics; D040641:Quantitative Trait Loci; D044767:Ubiquitin-Protein Ligases / Q000235:genetics
chemical_list: D011328:Prions; C544073:HECTD2 protein, human; D044767:Ubiquitin-Protein Ligases