title: [Conformational capacity of 2',3'-didehydro-2',3'-dideoxyadenosine as a key to understanding its biological activity: results of quantum chemical modelling].
abstract: Comprehensive conformational analysis of the biologically active nucleoside 2',3'-didehydro-2',3'-dideoxyadenosine (d4A) has been performed at the MP2/6-311++G(d,p)//DFT B3LYP/6-31G(d,p) level of theory. The energetic, geometrical and polar characteristics of twenty one d4A conformers as well as their conformational equilibrium were investigated. The electron density topological analysis allowed us to establish that the d4A molecule is stabilized by eight types of intramolecular interactions: O5'H...N3, O5'H...C8, C8H...O5', C2'H...N3, C5'H1...N3, C5'H2...N3 Ta C8H...H1/2C5'. The obtained results of conformational analysis lead us to think that d4A may be a terminator of the DNA chain sythesis in the 5'-3' direction. Thus it can be inferred that d4A competes with canonical 2'-deoxyadenosine in binding an active site of the corresponding enzyme.
authors.forename: A H
authors.initials: AH
authors.lastname: Ponomar'ova
authors.forename: Ie P
authors.initials: IeP
authors.lastname: Iurenko
authors.forename: R O
authors.initials: RO
authors.lastname: Zhurakivs'kyĭ
authors.forename: D M
authors.initials: DM
authors.lastname: Hovorun
mesh_terms: D018360:Crystallography, X-Ray; D004247:DNA / Q000737:chemistry; D016048:Dideoxyadenosine / Q000031:analogs & derivatives* / Q000737:chemistry / Q000494:pharmacology; D004583:Electrons; D006860:Hydrogen Bonding; D008958:Models, Molecular; D008968:Molecular Conformation; D011789:Quantum Theory
chemical_list: D016048:Dideoxyadenosine; C075923:2'3'-didehydro-2'3'-dideoxyadenosine; D004247:DNA