title: Extending KNIME for next-generation sequencing data analysis.
abstract: CONCLUSIONS
  KNIME (Konstanz Information Miner) is a user-friendly and comprehensive open-source data integration, processing, analysis and exploration platform. We present here new functionality and workflows that open the door to performing next-generation sequencing analysis using the KNIME framework.
  
  
  BACKGROUND
  All sources and compiled code are available via the KNIME update mechanism. Example workflows and descriptions are available through http://tech.knime.org/community/next-generation-sequencing.
  
  
  BACKGROUND
  bernd.jagla@pasteur.fr
  
  
  BACKGROUND
  Supplementary data are available at Bioinformatics online.
authors.affiliation: Departement Génomes et Génétique, Institut Pasteur, Plate-forme Transcriptome et Epigénome, 25 Rue du Docteur Roux, F-75015 Paris, France. bernd.jagla@pasteur.fr
authors.forename: Bernd
authors.initials: B
authors.lastname: Jagla
authors.forename: Bernd
authors.initials: B
authors.lastname: Wiswedel
authors.forename: Jean-Yves
authors.initials: JY
authors.lastname: Coppée
mesh_terms: D059014:High-Throughput Nucleotide Sequencing; D012984:Software; D057188:Workflow