title: [Evaluation of beta2-microglobuline expression level in gastrointestinal tract tumors due to usefulness as a reference gene in PCR method].
abstract: Quantitative and semi-quantitative determination of gene expression by PCR plays an important role in studying of tumors initiation and progression mechanisms. Selection of appropriate reference gene is a critical factor influencing the results of gene expression analysis. One of the most commonly used reference genes in PCR is beta2-microglobuline (beta2-M). Recent studies showed however that expression of some common reference genes might be unstable, therefore it is necessary to verify again their usefulness. The aim of the study was to determine the level of beta2-M mRNA in normal and tumor tissues of gastrointestinal tract due to adequate selection of reference gene in gene expression studies.
  
  
  METHODS
  Samples were taken from 253 patients operated on for gastrointestinal tract tumors: 22 with oral cavity cancer, 12 with benign and 50 with malignant liver tumors, 86 with colorectal cancer, and 83 with metachronous metastases to liver. Also 56 patients with liver cirrhosis were studied, which was treated as pre-tumor state. Together 309 patients were studied. RNA was isolated from tissues by Chomczynski method. The expression level of 12-M was determined by reverse transcriptase PCR (RT-PCR) and given in terms of optical density values.
  
  
  RESULTS
  Expression of beta2-M was observed in all studied tissues. There were no differences between normal and tumor tissue. The level of expression of beta2-M was different due to type of studied tissue (oral cavity, liver, colon).
  
  
  CONCLUSIONS
  The lack of significant differences in beta2-M expression level in normal and tumor tissues indicated that beta2-M can be used as reference gene in studies of gene expression in gastrointestinal tract tumors. On the other hand differences of beta2-M expression level in different types of tissues point to its tissue specificity and suggest application in PCR of more than one reference gene.
authors.affiliation: Warszawski Uniwersytet Medyczny, Katedra i Zakład Biochemii I Wydziału Lekarskiego.
authors.forename: Michał
authors.initials: M
authors.lastname: Skrzycki
authors.forename: Hanna
authors.initials: H
authors.lastname: Czeczot
authors.forename: Anna
authors.initials: A
authors.lastname: Barańczyk-Kuźma
authors.forename: Magdalena
authors.initials: M
authors.lastname: Mielczarek-Puta
authors.forename: Alicja
authors.initials: A
authors.lastname: Chrzanowsaka
authors.forename: Beata
authors.initials: B
authors.lastname: Gajewska
mesh_terms: D000328:Adult; D000368:Aged; D000369:Aged, 80 and over; D005770:Gastrointestinal Neoplasms / Q000235:genetics*; D020869:Gene Expression Profiling / Q000379:methods; D005819:Genetic Markers / Q000235:genetics; D006801:Humans; D008875:Middle Aged; D016133:Polymerase Chain Reaction / Q000379:methods; D012016:Reference Values; D001613:beta 2-Microglobulin / Q000378:metabolism*
chemical_list: D005819:Genetic Markers; D001613:beta 2-Microglobulin