title: Density functional theory study on the interaction between keto-9H guanine and aspartic acid.
abstract: A theoretical study was performed using density functional theory (DFT) to investigate hydrogen bonding interactions in signature complexes formed between keto-9H guanine (Gua) and aspartic acid (Asp) at neutral pH. Optimized geometries, binding energies and the theoretical IR spectra of guanine, aspartic acid and their corresponding complexes (Gua-Asp) were calculated using the B3LYP method and the 6-31+G(d) basis set. Stationary points found to be at local minima on the potential energy surface were verified by second derivative harmonic vibrational frequency calculations at the same level of theory. AIM theory was used to analyze the hydrogen bonding characteristics of these DNA base complex systems. Our results show that the binding motif for the most stable complex is strikingly similar to a Watson-Crick motif observed in the guanine-cytosine base pair. We have found a range of hydrogen bonding interactions between guanine and aspartic acid in the six complexes. This was further verified by theoretical IR spectra of ω(C-H--O-H) cm(-1) stretches for the Gua-Asp complexes. The electron density plot indicates strong hydrogen bonding as shown by the 2p(z) dominant HOMO orbital character.
authors.affiliation: Interdisciplinary Nanotoxicity Center, Department of Chemistry, Jackson State University, Jackson, MS 39217, USA.
authors.forename: Patrina Thompson
authors.initials: PT
authors.lastname: Harris
authors.forename: Glake A
authors.initials: GA
authors.lastname: Hill
mesh_terms: D001224:Aspartic Acid / Q000737:chemistry*; D020029:Base Pairing; D003198:Computer Simulation; D003596:Cytosine / Q000737:chemistry*; D006147:Guanine / Q000031:analogs & derivatives / Q000737:chemistry*; D006860:Hydrogen Bonding; D006863:Hydrogen-Ion Concentration; D007700:Kinetics; D008956:Models, Chemical; D008958:Models, Molecular; D011789:Quantum Theory; D013055:Spectrophotometry, Infrared; D013816:Thermodynamics
chemical_list: D001224:Aspartic Acid; D006147:Guanine; D003596:Cytosine