title: An analysis of selection on candidate genes for regulation, mobilization, uptake, and transport of iron in maize.
abstract: Insufficient iron (Fe) availability, which frequently occurs in soils with high pH levels, can lead to leaf chlorosis, a reduced Fe content in harvest products, and yield reduction in maize. The objectives of this study were (i) to describe patterns of sequence variation of 14 candidate genes for mobilization, uptake, and transport of Fe in maize, as well as regulatory function on these processes; (ii) to examine whether Fe-efficiency is an adaptive trait by determining if these genes were targets of selection during domestication; and (iii) to test if the allele distribution at these candidate genes is different for the different subpopulations of maize. The nucleotide diversity of Mtk was reduced by 78% in maize compared with teosinte. The results of our study revealed for the genes Naat1, Nas1, Nramp3, Mtk, and Ys1 a selective sweep, which suggests that these genes might be important for the fast adaptation of maize to new environments with different Fe availabilities.
authors.affiliation: Max Planck Institute for Plant Breeding Research, Cologne, Germany.
authors.forename: Andreas
authors.initials: A
authors.lastname: Benke
authors.forename: Benjamin
authors.initials: B
authors.lastname: Stich
mesh_terms: D000220:Adaptation, Biological; D000483:Alleles; D005787:Gene Frequency; D017343:Genes, Plant; D014644:Genetic Variation; D023281:Genomics; D017136:Ion Transport / Q000235:genetics*; D007501:Iron / Q000378:metabolism*; D015810:Linkage Disequilibrium; D010641:Phenotype; D010940:Plant Proteins / Q000235:genetics*; D016133:Polymerase Chain Reaction; D012641:Selection, Genetic; D016415:Sequence Alignment; D017422:Sequence Analysis, DNA; D003313:Zea mays / Q000235:genetics* / Q000378:metabolism
chemical_list: D010940:Plant Proteins; D007501:Iron