title: Outer membrane proteome and its regulation networks in response to glucose concentration changes in Escherichia coli.
abstract: Escherichia coli growth is a complicated process involved in many factors including the utilization of glucose. It has been reported that E. coli cell growth rate is closely related with glucose concentrations in the cell culture medium. However, the protein regulation networks in response to glucose concentration changes are largely unknown. In the present study, a sub-proteomic methodology has been utilized to characterize alterations of E. coli OM proteins in response to 0.02, 0.2 and 2% concentrations of glucose. In comparison with E. coli cells treated with 0.2% glucose concentration, downregulation of FhuE, FepA, CirA, TolC and OmpX and upregulation of LamB, FadL, OmpF, OmpT and Dps were detected in the E. coli cells treated with 0.02% glucose, and a decrease of TolC, LamB, OmpF, OmpT, OmpX, Dps and elevation of FhuE, FepA, CirA, YncD, FadL and MipA were found in 2% glucose. TolC, LamB and OmpT showed more important roles than other altered OM proteins. Furthermore, the interaction among these altered OM proteins was investigated, and protein interaction networks were characterized. In the networks, all proteins were interacted and regulated by others. TolC, LamB and Dps were the top three proteins that regulated more proteins than others, whereas CirA and OmpT were the top two proteins that were regulated by others. The protein networks could be modified correspondingly with the changes of glucose concentrations. The modifications included the addition of new OM proteins or the change of regulation direction. These findings suggest the important roles of the bacterial OM protein network in E. coli's responses to glucose concentration changes and other environment stresses.
authors.affiliation: Center for Proteomics, State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, University City, Guangzhou 510006, People's Republic of China.
authors.forename: Jun-Ning
authors.initials: JN
authors.lastname: Yang
authors.forename: Chao
authors.initials: C
authors.lastname: Wang
authors.forename: Chang
authors.initials: C
authors.lastname: Guo
authors.forename: Xuan-Xian
authors.initials: XX
authors.lastname: Peng
authors.forename: Hui
authors.initials: H
authors.lastname: Li
mesh_terms: D001425:Bacterial Outer Membrane Proteins / Q000235:genetics* / Q000378:metabolism; D015180:Electrophoresis, Gel, Two-Dimensional; D004926:Escherichia coli / Q000378:metabolism*; D029968:Escherichia coli Proteins / Q000235:genetics* / Q000378:metabolism; D005947:Glucose / Q000378:metabolism*; D020543:Proteome / Q000235:genetics / Q000378:metabolism*; D040901:Proteomics / Q000379:methods
chemical_list: D001425:Bacterial Outer Membrane Proteins; D029968:Escherichia coli Proteins; D020543:Proteome; D005947:Glucose