title: Comparison of bacterial diversity in proglacial soil from Kafni Glacier, Himalayan Mountain ranges, India, with the bacterial diversity of other glaciers in the world.
abstract: Two 16S rRNA gene clone libraries (KF and KS) were constructed using two soil samples (K7s and K8s) collected near Kafni Glacier, Himalayas. The two libraries yielded a total of 648 clones. Phyla Actinobacteria, Bacteroidetes, Chloroflexi Firmicutes, Proteobacteria, Spirochaetae, Tenericutes and Verrucomicrobia were common to the two libraries. Phyla Acidobacteria, Chlamydiae and Nitrospirae were present only in KF library, whereas Lentisphaerae and TM7 were detected only in KS. In the two libraries, clones belonging to phyla Bacteroidetes and Proteobacteria were the most predominant. Principal component analysis (PCA) revealed that KF and KS were different and arsenic content influenced the differences in the percentage of OTUs. PCA indicated that high water content in the K8s sample results in high total bacterial count. PCA also indicated that bacterial diversity of KF and KS was similar to soils from the Pindari Glacier, Himalayas; Samoylov Island, Siberia; Schrimacher Oasis, Antarctica and Siberian tundra. The eleven bacterial strains isolated from the above two soil samples were phylogenetically related to six different genera. All the isolates were psychro-, halo- and alkalitolerant. Amylase, lipase and urease activities were detected in the majority of the strains. Long chain, saturated, unsaturated and branched fatty acids were predominant in the psychrotolerant bacteria.
authors.affiliation: Centre for Cellular and Molecular Biology, India.
authors.forename: T N R
authors.initials: TN
authors.lastname: Srinivas
authors.forename: S M
authors.initials: SM
authors.lastname: Singh
authors.forename: Suman
authors.initials: S
authors.lastname: Pradhan
authors.forename: M S
authors.initials: MS
authors.lastname: Pratibha
authors.forename: K Hara
authors.initials: KH
authors.lastname: Kishore
authors.forename: Ashish K
authors.initials: AK
authors.lastname: Singh
authors.forename: Z
authors.initials: Z
authors.lastname: Begum
authors.forename: S R
authors.initials: SR
authors.lastname: Prabagaran
authors.forename: G S N
authors.initials: GS
authors.lastname: Reddy
authors.forename: S
authors.initials: S
authors.lastname: Shivaji
mesh_terms: D001419:Bacteria / Q000145:classification* / Q000235:genetics; D001483:Base Sequence; D044822:Biodiversity; D015169:Colony Count, Microbial; D017931:DNA Primers; D007194:India; D010802:Phylogeny; D016133:Polymerase Chain Reaction; D025341:Principal Component Analysis; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D012988:Soil Microbiology
chemical_list: D017931:DNA Primers; D012336:RNA, Ribosomal, 16S