title: Chemical kinetic analysis of thermal decay of rhodopsin reveals unusual energetics of thermal isomerization and hydrolysis of Schiff base.
abstract: The thermal properties of rhodopsin, which set the threshold of our vision, have long been investigated, but the chemical kinetics of the thermal decay of rhodopsin has not been revealed in detail. To understand thermal decay quantitatively, we propose a kinetic model consisting of two pathways: 1) thermal isomerization of 11-cis-retinal followed by hydrolysis of Schiff base (SB) and 2) hydrolysis of SB in dark state rhodopsin followed by opsin-catalyzed isomerization of free 11-cis-retinal. We solve the kinetic model mathematically and use it to analyze kinetic data from four experiments that we designed to assay thermal decay, isomerization, hydrolysis of SB using dark state rhodopsin, and hydrolysis of SB using photoactivated rhodopsin. We apply the model to WT rhodopsin and E181Q and S186A mutants at 55 °C, as well as WT rhodopsin in H(2)O and D(2)O at 59 °C. The results show that the hydrogen-bonding network strongly restrains thermal isomerization but is less important in opsin and activated rhodopsin. Furthermore, the ability to obtain individual rate constants allows comparison of thermal processes under various conditions. Our kinetic model and experiments reveal two unusual energetic properties: the steep temperature dependence of the rates of thermal isomerization and SB hydrolysis in the dark state and a strong deuterium isotope effect on dark state SB hydrolysis. These findings can be applied to study pathogenic rhodopsin mutants and other visual pigments.
authors.affiliation: Department of Chemistry, Yale University, New Haven, Connecticut 06520.
authors.forename: Jian
authors.initials: J
authors.lastname: Liu
authors.affiliation: Department of Chemistry, Yale University, New Haven, Connecticut 06520.
authors.forename: Monica Yun
authors.initials: MY
authors.lastname: Liu
authors.affiliation: Department of Chemistry, Yale University, New Haven, Connecticut 06520.
authors.forename: Li
authors.initials: L
authors.lastname: Fu
authors.affiliation: Department of Chemistry, Yale University, New Haven, Connecticut 06520.
authors.forename: Gefei Alex
authors.initials: GA
authors.lastname: Zhu
authors.affiliation: Department of Chemistry, Yale University, New Haven, Connecticut 06520. Electronic address: elsa.yan@yale.edu.
authors.forename: Elsa C Y
authors.initials: ECY
authors.lastname: Yan
mesh_terms: D000818:Animals; D002417:Cattle; D019143:Evolution, Molecular; D005128:Eye Diseases / Q000378:metabolism; D057809:HEK293 Cells; D006801:Humans; D006860:Hydrogen Bonding; D006868:Hydrolysis; D007700:Kinetics; D008962:Models, Theoretical; D009154:Mutation; D012174:Retinitis Pigmentosa / Q000378:metabolism; D012243:Rhodopsin / Q000737:chemistry*; D012545:Schiff Bases / Q000737:chemistry*; D013696:Temperature
chemical_list: D012545:Schiff Bases; D012243:Rhodopsin