title: Force field parametrization and molecular dynamics simulation of flexible POSS-linked (NHC; phosphine) Ru catalytic complexes.
abstract: In recent years, N-heterocyclic carbene (NHC) or phospine groups have been put forward as candidate catalysts ligands for olefin metathesis reactions to be performed using multistep methods. Some of these proposed ligands contain polyhedral oligomeric silsesquioxane (POSS) structures linked to NHC rings by means of alkyl chains. Some important properties for the prediction of catalytic activity, such as the theoretically defined buried volume, are related to the conformational characteristics of these complex ligands that can be studied through molecular dynamics simulations. However, the chemical structure of resulting catalytic complexes usually contains atoms or groups that are not included in the common forcefields used in simulations. In this work we focus on complexes formed by a catalytic metal center (Ru) with both phospine and POSS-linked NHC groups. The central part of the complexes contain atoms and groups that have bonds, bond angles, and torsional angles whose parameters have not been previously evaluated and included in existing force fields. We have performed basic ab initio quantum mechanical calculations based on the density functional theory to obtain energies for this central section. The force field parameters for bonds, bond angles, and torsional angles are then calculated from an analysis of energies calculated for the equilibrium and different locally deformed structures. Nonbonded interactions are also conveniently evaluated. From subsequent molecular dynamics simulations, we have obtained results that illustrate the conformational characteristics most closely connected with the catalytic activity.
authors.affiliation: Departamento de Ciencias y Técnicas Fisicoquímicas, Facultad de Ciencias, Universidad Nacional de Educación a Distancia, Madrid, Spain.
authors.forename: Amirhossein
authors.initials: A
authors.lastname: Ahmadi
authors.forename: Carl
authors.initials: C
authors.lastname: McBride
authors.forename: Juan J
authors.initials: JJ
authors.lastname: Freire
authors.forename: Anna
authors.initials: A
authors.lastname: Kajetanowicz
authors.forename: Justyna
authors.initials: J
authors.lastname: Czaban
authors.forename: Karol
authors.initials: K
authors.lastname: Grela
mesh_terms: D002384:Catalysis; D006571:Heterocyclic Compounds / Q000737:chemistry; D008697:Methane / Q000031:analogs & derivatives / Q000737:chemistry; D008968:Molecular Conformation; D056004:Molecular Dynamics Simulation; D009942:Organometallic Compounds / Q000737:chemistry*; D017646:Organosilicon Compounds / Q000737:chemistry*; D010720:Phosphines / Q000737:chemistry; D012428:Ruthenium / Q000737:chemistry*
chemical_list: D006571:Heterocyclic Compounds; D009942:Organometallic Compounds; D017646:Organosilicon Compounds; D010720:Phosphines; C030011:carbene; D012428:Ruthenium; C044646:phosphine; D008697:Methane