title: Theoretical study of hydrogen bonding in homodimers and heterodimers of amide, boronic acid, and carboxylic acid, free and in encapsulation complexes.
abstract: The homodimers and the heterodimers of two amides, two boronic acids, and two carboxylic acids have been calculated in the gas phase and in N,N-dimethylformamide (DMF) and CCl(4) solvents using the DFT (M06-2X and M06-L) and the MP2 methods in conjunction with the 6-31G(d,p) and 6-311+G(d,p) basis sets. Furthermore, their pairwise coencapsulation was studied to examine its effect on the calculated properties of the hydrogen bonds at the ONIOM[M06-2X/6-31G(d,p);PM6], ONIOM[MP2/6-31G(d,p); PM6], and M06-2X/6-31G(d,p) levels of theory. The present work is directed toward the theoretical rationalization and interpretation of recent experimental results on hydrogen bonding in encaptulation complexes [D. Ajami et al. J. Am. Chem. Soc. 2011, 133, 9689-9691]. The calculated dimerization energy (ΔE) values range from 0.74 to 0.35 eV for the different dimers in the gas phase, with the ordering carboxylic homodimers > amide-carboxylic dimers > amide homodimers > boronic-carboxylic dimers > amide-boronic dimers > boronic homodimers. In solvents, generally smaller ΔE values are calculated with only small variations in the ordering. In the capsule, the ΔE values range between 0.67 and 0.33 eV with practically the same ordering as in the gas phase. The calculated % distributions of the encapsulated dimers, taking into account statistical factors, are in agreement with the experimental distribution, where the occurrence of boronic homodimer dominates, even though it is calculated to have the smallest ΔE.
authors.affiliation: Theoretical and Physical Chemistry Institute, National Hellenic Research Foundation, 48 Vassileos Constantinou, Athens 116 35, Greece.
authors.forename: Demeter
authors.initials: D
authors.lastname: Tzeli
authors.forename: Giannoula
authors.initials: G
authors.lastname: Theodorakopoulos
authors.forename: Ioannis D
authors.initials: ID
authors.lastname: Petsalakis
authors.forename: Dariush
authors.initials: D
authors.lastname: Ajami
authors.forename: Julius
authors.initials: J
authors.lastname: Rebek
mesh_terms: D000577:Amides / Q000737:chemistry*; D001897:Boronic Acids / Q000737:chemistry*; D002214:Capsules / Q000737:chemistry*; D002264:Carboxylic Acids / Q000737:chemistry*; D003198:Computer Simulation; D019281:Dimerization; D005740:Gases / Q000737:chemistry; D006860:Hydrogen Bonding; D008958:Models, Molecular; D013816:Thermodynamics
chemical_list: D000577:Amides; D001897:Boronic Acids; D002214:Capsules; D002264:Carboxylic Acids; D005740:Gases