title: Regulation of biochemical reaction rates by flexible tethers.
abstract: We explore how ligand-receptor binding kinetics can be controlled by tethering the receptor to the end of a flexible polymer. The tether confines the diffusive motion of the receptor thus influencing the rate at which it captures ligands that are free in solution. We compute steady-state collision rates between ligand and receptor for this "tethered-capture" mechanism using a combination of analytic and numerical techniques. In doing so, we uncover a dimensionless control parameter, the "opacity," that determines under what conditions and to what extent a tether regulates the ligand-receptor collision rate. We compute the opacity for a number of different tethering scenarios that appear in biology and use these results to predict the affect of changing the length and flexibility of the tether on the rate at which ligands are captured from solution.
authors.affiliation: Department of Physics, Brandeis University, Waltham, Massachusetts 02454, USA.
authors.forename: Daniel
authors.initials: D
authors.lastname: Reeves
authors.forename: Keith
authors.initials: K
authors.lastname: Cheveralls
authors.forename: Jane
authors.initials: J
authors.lastname: Kondev
mesh_terms: D000199:Actins / Q000737:chemistry / Q000378:metabolism; D004058:Diffusion; D007700:Kinetics; D008024:Ligands; D008954:Models, Biological; D008958:Models, Molecular; D011108:Polymers / Q000737:chemistry*; D011485:Protein Binding; D011487:Protein Conformation
chemical_list: D000199:Actins; D008024:Ligands; D011108:Polymers