title: Growth inhibition at the ice prismatic plane induced by a spruce budworm antifreeze protein: a molecular dynamics simulation study.
abstract: A molecular dynamics simulation was conducted to investigate the growth kinetics at the ice prismatic interface to which a spruce budworm antifreeze protein was bound. Two initial binding conformations of the protein at the interface--one energetically stable and the other energetically unstable--were examined. For both binding conformations, the growth of ice was observed around the protein. A sharp decrease in the rate of ice growth was observed around the protein that initially had the energetically stable binding conformation. Simulation results suggest that the observed decrease in the ice growth rate was attributable to melting point depression caused by the Gibbs-Thomson effect. The protein that initially had the energetically unstable binding conformation markedly relaxed so as to stably bind to the prismatic plane interface of the grown ice; thereafter, a decrease in the ice growth rate was observed as well. However, the binding conformation that the protein approached during the relaxation was different from that of the protein that initially had the energetically stable binding conformation. Thus, the simulation indicates the existence of two binding conformations for inducing a decrease in the ice growth rate. The results are possibly related to the hyperactivity of a spruce budworm antifreeze protein in real systems.
authors.affiliation: National Institute of Advanced Industrial Science and Technology, Tsukuba 305-8569, Japan. hiroki.nada@aist.go.jp
authors.forename: H
authors.initials: H
authors.lastname: Nada
authors.forename: Y
authors.initials: Y
authors.lastname: Furukawa
mesh_terms: D000818:Animals; D021301:Antifreeze Proteins / Q000737:chemistry*; D007053:Ice; D056004:Molecular Dynamics Simulation; D009036:Moths / Q000378:metabolism; D044367:Phase Transition; D017433:Protein Structure, Secondary; D013997:Time Factors; D014867:Water / Q000737:chemistry
chemical_list: D021301:Antifreeze Proteins; D007053:Ice; D014867:Water