title: Rapid development of Proteomic applications with the AIBench framework.
abstract: In this paper we present two case studies of Proteomics applications development using the AIBench framework, a Java desktop application framework mainly focused in scientific software development. The applications presented in this work are Decision Peptide-Driven, for rapid and accurate protein quantification, and Bacterial Identification, for Tuberculosis biomarker search and diagnosis. Both tools work with mass spectrometry data, specifically with MALDI-TOF spectra, minimizing the time required to process and analyze the experimental data.
authors.affiliation: Escuela Superior de Ingeniería Informática, University of Vigo, Edificio Politécnico, Campus Universitario As Lagoas s/n., 32004 Ourense, Spain.
authors.forename: Hugo
authors.initials: H
authors.lastname: López-Fernández
authors.forename: Miguel
authors.initials: M
authors.lastname: Reboiro-Jato
authors.forename: Daniel
authors.initials: D
authors.lastname: Glez-Peña
authors.forename: José R
authors.initials: JR
authors.lastname: Méndez Reboredo
authors.forename: Hugo M
authors.initials: HM
authors.lastname: Santos
authors.forename: Ricardo J
authors.initials: RJ
authors.lastname: Carreira
authors.forename: José L
authors.initials: JL
authors.lastname: Capelo-Martínez
authors.forename: Florentino
authors.initials: F
authors.lastname: Fdez-Riverola
mesh_terms: D001419:Bacteria / Q000737:chemistry / Q000235:genetics / Q000378:metabolism*; D001426:Bacterial Proteins / Q000737:chemistry / Q000235:genetics / Q000378:metabolism*; D015415:Biomarkers / Q000737:chemistry / Q000378:metabolism; D040901:Proteomics / Q000295:instrumentation* / Q000379:methods*; D012984:Software; D019032:Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization / Q000379:methods; D014376:Tuberculosis / Q000235:genetics / Q000378:metabolism*
chemical_list: D001426:Bacterial Proteins; D015415:Biomarkers