title: Characterization of specificity of bacterial community structure within the burrow environment of the marine polychaete Hediste (Nereis) diversicolor.
abstract: Bioturbation is known to stimulate microbial communities, especially in macrofaunal burrows where the abundance and activities of bacteria are increased. Until now, these microbial communities have been poorly characterized and an important ecological question remains: do burrow walls harbor similar or specific communities compared with anoxic and surface sediments? The bacterial community structure of coastal sediments inhabited by the polychaete worm Hediste diversicolor was investigated. Surface, burrow wall and anoxic sediments were collected at the Carteau beach (Gulf of Fos, Mediterranean Sea). Bacterial diversity was determined by analyzing small subunit ribosomal RNA (16S rRNA) sequences from three clone libraries (168, 179 and 129 sequences for the surface, burrow wall and anoxic sediments, respectively). Libraries revealed 306 different operational taxonomic units (OTUs) belonging to at least 15 bacterial phyla. Bioinformatic analyses and comparisons between the three clone libraries showed that the burrow walls harbored a specific bacterial community structure which differed from the surface and anoxic environments. More similarities were nevertheless found with the surface assemblage. Inside the burrow walls, the bacterial community was characterized by high biodiversity, which probably results from the biogeochemical heterogeneity of the burrow system.
authors.affiliation: Laboratoire de Microbiologie, Géochimie et Ecologie Marines (UMR CNRS 6117), Centre d'Océanologie de Marseille, Université de la Méditerranée, Campus de Luminy, Case 901, Marseille Cedex 9 13288, France.
authors.forename: Laura
authors.initials: L
authors.lastname: Pischedda
authors.forename: Cécile
authors.initials: C
authors.lastname: Militon
authors.forename: Franck
authors.initials: F
authors.lastname: Gilbert
authors.forename: Philippe
authors.initials: P
authors.lastname: Cuny
mesh_terms: D000818:Animals; D001419:Bacteria / Q000145:classification* / Q000235:genetics / Q000302:isolation & purification; D018407:Bacterial Physiological Phenomena; D044822:Biodiversity; D019295:Computational Biology; D017753:Ecosystem; D015723:Gene Library; D019015:Geologic Sediments / Q000382:microbiology*; D008522:Mediterranean Sea; D008969:Molecular Sequence Data; D011077:Polychaeta / Q000502:physiology*; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D017422:Sequence Analysis, DNA
chemical_list: D012336:RNA, Ribosomal, 16S