title: Reorganization energy for internal electron transfer in multicopper oxidases.
abstract: We have calculated the reorganization energy for the intramolecular electron transfer between the reduced type 1 copper site and the peroxy intermediate of the trinuclear cluster in the multicopper oxidase CueO. The calculations are performed at the combined quantum mechanics and molecular mechanics (QM/MM) level, based on molecular dynamics simulations with tailored potentials for the two copper sites. We obtain a reorganization energy of 91-133 kJ/mol, depending on the theoretical treatment. The two Cu sites contribute by 12 and 22 kJ/mol to this energy, whereas the solvent contribution is 34 kJ/mol. The rest comes from the protein, involving small contributions from many residues. We have also estimated the energy difference between the two electron-transfer states and show that the reduction of the peroxy intermediate is exergonic by 43-87 kJ/mol, depending on the theoretical method. Both the solvent and the protein contribute to this energy difference, especially charged residues close to the two Cu sites. We compare these estimates with energies obtained from QM/MM optimizations and QM calculations in a vacuum and discuss differences between the results obtained at various levels of theory.
authors.affiliation: Department of Theoretical Chemistry, Lund University, Lund, Sweden.
authors.forename: Lihong
authors.initials: L
authors.lastname: Hu
authors.forename: Maryam
authors.initials: M
authors.lastname: Farrokhnia
authors.forename: Jimmy
authors.initials: J
authors.lastname: Heimdal
authors.forename: Sergey
authors.initials: S
authors.lastname: Shleev
authors.forename: Lubomír
authors.initials: L
authors.lastname: Rulíšek
authors.forename: Ulf
authors.initials: U
authors.lastname: Ryde
mesh_terms: D001665:Binding Sites; D003300:Copper / Q000737:chemistry*; D004579:Electron Transport; D056004:Molecular Dynamics Simulation; D010088:Oxidoreductases / Q000737:chemistry*; D017434:Protein Structure, Tertiary; D011789:Quantum Theory; D012997:Solvents / Q000737:chemistry; D013816:Thermodynamics
chemical_list: D012997:Solvents; D003300:Copper; D010088:Oxidoreductases; C024748:copper oxidase