title: Transcriptomics of environmental acclimatization and survival in wild adult Pacific sockeye salmon (Oncorhynchus nerka) during spawning migration.
abstract: Environmental shifts accompanying salmon spawning migrations from ocean feeding grounds to natal freshwater streams can be severe, with the underlying stress often cited as a cause of increased mortality. Here, a salmonid microarray was used to characterize changes in gene expression occurring between ocean and river habitats in gill and liver tissues of wild migrating sockeye salmon (Oncorhynchus nerka Walbaum) returning to spawn in the Fraser River, British Columbia, Canada. Expression profiles indicate that the transcriptome of migrating salmon is strongly affected by shifting abiotic and biotic conditions encountered along migration routes. Conspicuous shifts in gene expression associated with changing salinity, temperature, pathogen exposure and dissolved oxygen indicate that these environmental variables most strongly impact physiology during spawning migrations. Notably, transcriptional changes related to osmoregulation were largely preparatory and occurred well before salmon encountered freshwater. In the river environment, differential expression of genes linked with elevated temperatures indicated that thermal regimes within the Fraser River are approaching tolerance limits for adult salmon. To empirically correlate gene expression with survival, biopsy sampling of gill tissue and transcriptomic profiling were combined with telemetry. Many genes correlated with environmental variables were differentially expressed between premature mortalities and successful migrants. Parametric survival analyses demonstrated a broad-scale transcriptional regulator, cofactor required for Sp1 transcriptional activation (CRSP), to be significantly predictive of survival. As the environmental characteristics of salmon habitats continue to change, establishing how current environmental conditions influence salmon physiology under natural conditions is critical to conserving this ecologically and economically important fish species.
authors.affiliation: Fisheries and Oceans Canada, Pacific Biological Station, 3190 Hammond Bay Road, Nanaimo, British Columbia, Canada V9T 6N7. tyler.evans@lifesci.ucsb.edu
authors.forename: Tyler G
authors.initials: TG
authors.lastname: Evans
authors.forename: Edd
authors.initials: E
authors.lastname: Hammill
authors.forename: Karia
authors.initials: K
authors.lastname: Kaukinen
authors.forename: Angela D
authors.initials: AD
authors.lastname: Schulze
authors.forename: David A
authors.initials: DA
authors.lastname: Patterson
authors.forename: Karl K
authors.initials: KK
authors.lastname: English
authors.forename: Janelle M R
authors.initials: JM
authors.lastname: Curtis
authors.forename: Kristina M
authors.initials: KM
authors.lastname: Miller
mesh_terms: D025041:Animal Migration / Q000502:physiology*; D000818:Animals; D001955:British Columbia; D002170:Canada; D005618:Fresh Water; D005786:Gene Expression Regulation / Q000235:genetics / Q000502:physiology; D005843:Geography; D020411:Oligonucleotide Array Sequence Analysis; D016133:Polymerase Chain Reaction; D012474:Salmon / Q000235:genetics* / Q000502:physiology; D059467:Transcriptome / Q000235:genetics*