title: ProfileChaser: searching microarray repositories based on genome-wide patterns of differential expression.
abstract: CONCLUSIONS
  We introduce ProfileChaser, a web server that allows for querying the Gene Expression Omnibus based on genome-wide patterns of differential expression. Using a novel, content-based approach, ProfileChaser retrieves expression profiles that match the differentially regulated transcriptional programs in a user-supplied experiment. This analysis identifies statistical links to similar expression experiments from the vast array of publicly available data on diseases, drugs, phenotypes and other experimental conditions.
  
  
  BACKGROUND
  http://profilechaser.stanford.edu
  
  
  BACKGROUND
  abutte@stanford.edu
  
  
  BACKGROUND
  Supplementary data are available at Bioinformatics online.
authors.affiliation: Division of Systems Medicine, Department of Pediatrics, Stanford University School of Medicine, Stanford, CA 94305, USA.
authors.forename: Jesse M
authors.initials: JM
authors.lastname: Engreitz
authors.forename: Rong
authors.initials: R
authors.lastname: Chen
authors.forename: Alexander A
authors.initials: AA
authors.lastname: Morgan
authors.forename: Joel T
authors.initials: JT
authors.lastname: Dudley
authors.forename: Rohan
authors.initials: R
authors.lastname: Mallelwar
authors.forename: Atul J
authors.initials: AJ
authors.lastname: Butte
mesh_terms: D000818:Animals; D001943:Breast Neoplasms / Q000188:drug therapy / Q000235:genetics; D045744:Cell Line, Tumor; D030541:Databases, Genetic; D005260:Female; D000071316:Forkhead Box Protein O3; D051858:Forkhead Transcription Factors / Q000235:genetics; D020869:Gene Expression Profiling; D055106:Genome-Wide Association Study; D006801:Humans; D020407:Internet; D008297:Male; D020411:Oligonucleotide Array Sequence Analysis; D011471:Prostatic Neoplasms / Q000188:drug therapy; D011960:Receptors, Estrogen; D014584:User-Computer Interface
chemical_list: D000071316:Forkhead Box Protein O3; D051858:Forkhead Transcription Factors; C474033:FoxO3 protein, mouse; D011960:Receptors, Estrogen