title: Time series hyperspectral chemical imaging data: challenges, solutions and applications.
abstract: Hyperspectral chemical imaging (HCI) integrates imaging and spectroscopy resulting in three-dimensional data structures, hypercubes, with two spatial and one wavelength dimension. Each spatial image pixel in a hypercube contains a spectrum with >100 datapoints. While HCI facilitates enhanced monitoring of multi-component systems; time series HCI offers the possibility of a more comprehensive understanding of the dynamics of such systems and processes. This implies a need for modeling strategies that can cope with the large multivariate data structures generated in time series HCI experiments. The challenges posed by such data include dimensionality reduction, temporal morphological variation of samples and instrumental drift. This article presents potential solutions to these challenges, including multiway analysis, object tracking, multivariate curve resolution and non-linear regression. Several real world examples of time series HCI data are presented to illustrate the proposed solutions.
authors.affiliation: Biosystems Engineering, School of Agriculture, Food Science and Veterinary Medicine, University College Dublin, Belfield, Dublin 4, Ireland. aoife.gowen@ucd.ie
authors.forename: A A
authors.initials: AA
authors.lastname: Gowen
authors.forename: F
authors.initials: F
authors.lastname: Marini
authors.forename: C
authors.initials: C
authors.lastname: Esquerre
authors.forename: C
authors.initials: C
authors.lastname: O'Donnell
authors.forename: G
authors.initials: G
authors.lastname: Downey
authors.forename: J
authors.initials: J
authors.lastname: Burger
mesh_terms: D000363:Agaricales / Q000737:chemistry* / Q000648:ultrastructure; D000465:Algorithms; D016000:Cluster Analysis; D021621:Imaging, Three-Dimensional / Q000379:methods*; D007700:Kinetics; D015999:Multivariate Analysis; D013053:Spectrophotometry / Q000379:methods; D019265:Spectroscopy, Near-Infrared / Q000379:methods*