title: The Infobiotics Workbench: an integrated in silico modelling platform for Systems and Synthetic Biology.
abstract: CONCLUSIONS
  The Infobiotics Workbench is an integrated software suite incorporating model specification, simulation, parameter optimization and model checking for Systems and Synthetic Biology. A modular model specification allows for straightforward creation of large-scale models containing many compartments and reactions. Models are simulated either using stochastic simulation or numerical integration, and visualized in time and space. Model parameters and structure can be optimized with evolutionary algorithms, and model properties calculated using probabilistic model checking.
  
  
  BACKGROUND
  Source code and binaries for Linux, Mac and Windows are available at http://www.infobiotics.org/infobiotics-workbench/; released under the GNU General Public License (GPL) version 3.
  
  
  BACKGROUND
  Natalio.Krasnogor@nottingham.ac.uk.
authors: Automated Scheduling, Optimisation and Planning Group, School of Computer Science, University of Nottingham, Nottingham, NG8 1BB, UK.
authors: Jonathan
authors: J
authors: Blakes
authors: Jamie
authors: J
authors: Twycross
authors: Francisco Jose
authors: FJ
authors: Romero-Campero
authors: Natalio
authors: N
authors: Krasnogor
mesh_terms: D000465:Algorithms; D003198:Computer Simulation; D006801:Humans; D008954:Models, Biological; D015233:Models, Statistical; D011381:Programming Languages; D012984:Software; D058615:Synthetic Biology; D049490:Systems Biology