title: FungiDB: an integrated functional genomics database for fungi.
abstract: FungiDB (http://FungiDB.org) is a functional genomic resource for pan-fungal genomes that was developed in partnership with the Eukaryotic Pathogen Bioinformatic resource center (http://EuPathDB.org). FungiDB uses the same infrastructure and user interface as EuPathDB, which allows for sophisticated and integrated searches to be performed using an intuitive graphical system. The current release of FungiDB contains genome sequence and annotation from 18 species spanning several fungal classes, including the Ascomycota classes, Eurotiomycetes, Sordariomycetes, Saccharomycetes and the Basidiomycota orders, Pucciniomycetes and Tremellomycetes, and the basal 'Zygomycete' lineage Mucormycotina. Additionally, FungiDB contains cell cycle microarray data, hyphal growth RNA-sequence data and yeast two hybrid interaction data. The underlying genomic sequence and annotation combined with functional data, additional data from the FungiDB standard analysis pipeline and the ability to leverage orthology provides a powerful resource for in silico experimentation.
authors: Department of Plant Pathology & Microbiology, University of California, Riverside, CA 92521, USA. jason.stajich@ucr.edu
authors: Jason E
authors: JE
authors: Stajich
authors: Todd
authors: T
authors: Harris
authors: Brian P
authors: BP
authors: Brunk
authors: John
authors: J
authors: Brestelli
authors: Steve
authors: S
authors: Fischer
authors: Omar S
authors: OS
authors: Harb
authors: Jessica C
authors: JC
authors: Kissinger
authors: Wei
authors: W
authors: Li
authors: Vishal
authors: V
authors: Nayak
authors: Deborah F
authors: DF
authors: Pinney
authors: Chris J
authors: CJ
authors: Stoeckert
authors: David S
authors: DS
authors: Roos
mesh_terms: D030541:Databases, Genetic; D016681:Genome, Fungal; D023281:Genomics; D058977:Molecular Sequence Annotation; D012984:Software; D018511:Systems Integration