title: Phylogenetic diversity of insecticolous fusaria inferred from multilocus DNA sequence data and their molecular identification via FUSARIUM-ID and Fusarium MLST.
abstract: We constructed several multilocus DNA sequence datasets to assess the phylogenetic diversity of insecticolous fusaria, especially focusing on those housed at the Agricultural Research Service Collection of Entomopathogenic Fungi (ARSEF), and to aid molecular identifications of unknowns via the FUSARIUM-ID and Fusarium MLST online databases and analysis packages. Analyses of a 190-taxon, two-locus dataset, which included 159 isolates from insects, indicated that: (i) insect-associated fusaria were nested within 10 species complexes spanning the phylogenetic breadth of Fusarium, (ii) novel, putatively unnamed insecticolous species were nested within 8/10 species complexes and (iii) Latin binomials could be applied with confidence to only 18/58 phylogenetically distinct fusaria associated with pest insects. Phylogenetic analyses of an 82-taxon, three-locus dataset nearly fully resolved evolutionary relationships among the 10 clades containing insecticolous fusaria. Multilocus typing of isolates within four species complexes identified surprisingly high genetic diversity in that 63/65 of the fusaria typed represented newly discovered haplotypes. The DNA sequence data, together with corrected ABI sequence chromatograms and alignments, have been uploaded to the following websites dedicated to identifying fusaria: FUSARIUM-ID (http://isolate.fusariumdb.org) at Pennsylvania State University's Department of Plant Pathology and Fusarium MLST (http://www.cbs.knaw.nl/fusarium) at the Centraalbureau voor Schimmelcultures (CBS-KNAW) Fungal Biodiversity Center.
authors.affiliation: National Center for Agricultural Utilization Research, U.S. Department of Agriculture, Peoria, IL 61604-3999, USA. kerry.odonnell@ars.usda.gov
authors.forename: Kerry
authors.initials: K
authors.lastname: O'Donnell
authors.forename: Richard A
authors.initials: RA
authors.lastname: Humber
authors.forename: David M
authors.initials: DM
authors.lastname: Geiser
authors.forename: Seogchan
authors.initials: S
authors.lastname: Kang
authors.forename: Bongsoo
authors.initials: B
authors.lastname: Park
authors.forename: Vincent A R G
authors.initials: VA
authors.lastname: Robert
authors.forename: Pedro W
authors.initials: PW
authors.lastname: Crous
authors.forename: Peter R
authors.initials: PR
authors.lastname: Johnston
authors.forename: Takayuki
authors.initials: T
authors.lastname: Aoki
authors.forename: Alejandro P
authors.initials: AP
authors.lastname: Rooney
authors.forename: Stephen A
authors.initials: SA
authors.lastname: Rehner
mesh_terms: D000053:Acari / Q000382:microbiology; D000818:Animals; D001483:Base Sequence; D004271:DNA, Fungal / Q000737:chemistry / Q000235:genetics; D005670:Fusarium / Q000145:classification* / Q000235:genetics; D005800:Genes, Fungal / Q000235:genetics; D056426:Genetic Loci / Q000235:genetics; D014644:Genetic Variation / Q000235:genetics*; D005838:Genotype; D007313:Insecta / Q000382:microbiology*; D008969:Molecular Sequence Data; D058885:Multilocus Sequence Typing / Q000379:methods*; D016533:Mycological Typing Techniques; D009348:Nematoda / Q000382:microbiology; D010802:Phylogeny; D016415:Sequence Alignment; D012988:Soil Microbiology
chemical_list: D004271:DNA, Fungal