title: Major submissions tool developments at the European Nucleotide Archive.
abstract: The European Nucleotide Archive (ENA; http://www.ebi.ac.uk/ena), Europe's primary nucleotide sequence resource, captures and presents globally comprehensive nucleic acid sequence and associated information. Covering the spectrum from raw data to assembled and functionally annotated genomes, the ENA has witnessed a dramatic growth resulting from advances in sequencing technology and ever broadening application of the methodology. During 2011, we have continued to operate and extend the broad range of ENA services. In particular, we have released major new functionality in our interactive web submission system, Webin, through developments in template-based submissions for annotated sequences and support for raw next-generation sequence read submissions.
authors.affiliation: European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. amid@ebi.ac.uk
authors.forename: Clara
authors.initials: C
authors.lastname: Amid
authors.forename: Ewan
authors.initials: E
authors.lastname: Birney
authors.forename: Lawrence
authors.initials: L
authors.lastname: Bower
authors.forename: Ana
authors.initials: A
authors.lastname: Cerdeño-Tárraga
authors.forename: Ying
authors.initials: Y
authors.lastname: Cheng
authors.forename: Iain
authors.initials: I
authors.lastname: Cleland
authors.forename: Nadeem
authors.initials: N
authors.lastname: Faruque
authors.forename: Richard
authors.initials: R
authors.lastname: Gibson
authors.forename: Neil
authors.initials: N
authors.lastname: Goodgame
authors.forename: Christopher
authors.initials: C
authors.lastname: Hunter
authors.forename: Mikyung
authors.initials: M
authors.lastname: Jang
authors.forename: Rasko
authors.initials: R
authors.lastname: Leinonen
authors.forename: Xin
authors.initials: X
authors.lastname: Liu
authors.forename: Arnaud
authors.initials: A
authors.lastname: Oisel
authors.forename: Nima
authors.initials: N
authors.lastname: Pakseresht
authors.forename: Sheila
authors.initials: S
authors.lastname: Plaister
authors.forename: Rajesh
authors.initials: R
authors.lastname: Radhakrishnan
authors.forename: Kethi
authors.initials: K
authors.lastname: Reddy
authors.forename: Stephane
authors.initials: S
authors.lastname: Rivière
authors.forename: Marc
authors.initials: M
authors.lastname: Rossello
authors.forename: Alexander
authors.initials: A
authors.lastname: Senf
authors.forename: Dimitriy
authors.initials: D
authors.lastname: Smirnov
authors.forename: Petra
authors.initials: P
authors.lastname: Ten Hoopen
authors.forename: Daniel
authors.initials: D
authors.lastname: Vaughan
authors.forename: Robert
authors.initials: R
authors.lastname: Vaughan
authors.forename: Vadim
authors.initials: V
authors.lastname: Zalunin
authors.forename: Guy
authors.initials: G
authors.lastname: Cochrane
mesh_terms: D030561:Databases, Nucleic Acid; D023281:Genomics; D059014:High-Throughput Nucleotide Sequencing; D020407:Internet; D058977:Molecular Sequence Annotation; D017422:Sequence Analysis, DNA; D017423:Sequence Analysis, RNA; D012984:Software; D014584:User-Computer Interface
references.citation: Nucleic Acids Res. 2011 Jan;39(Database issue):D15-8
references.pmid: 21106499
references.citation: Nat Biotechnol. 2011 May;29(5):415-20
references.pmid: 21552244
references.citation: PLoS Pathog. 2011 Sep;7(9):e1002217
references.pmid: 21909268
references.citation: Genome Res. 2011 May;21(5):734-40
references.pmid: 21245279
references.citation: Proc Natl Acad Sci U S A. 2011 Sep 20;108(38):E746-52
references.pmid: 21876176
references.citation: BMC Genomics. 2011 Jul 26;12:376
references.pmid: 21791039
references.citation: Nucleic Acids Res. 2011 Jan;39(Database issue):D22-7
references.pmid: 21062814
references.citation: Nature. 2011 May 19;473(7347):398-402
references.pmid: 21460836
references.citation: Nucleic Acids Res. 2011 Jan;39(Database issue):D32-7
references.pmid: 21071399
references.citation: ISME J. 2011 Oct;5(10):1565-7
references.pmid: 21472015
references.citation: Nature. 2011 Aug 28;477(7365):419-23
references.pmid: 21874022
references.citation: Nucleic Acids Res. 2011 Jan;39(Database issue):D19-21
references.pmid: 21062823