title: Genomics in mammalian cell culture bioprocessing.
abstract: Explicitly identifying the genome of a host organism including sequencing, mapping, and annotating its genetic code has become a priority in the field of biotechnology with aims at improving the efficiency and understanding of cell culture bioprocessing. Recombinant protein therapeutics, primarily produced in mammalian cells, constitute a $108 billion global market. The most common mammalian cell line used in biologic production processes is the Chinese hamster ovary (CHO) cell line, and although great improvements have been made in titer production over the past 25 years, the underlying molecular and physiological factors are not well understood. Confident understanding of CHO bioprocessing elements (e.g. cell line selection, protein production, and reproducibility of process performance and product specifications) would significantly improve with a well understood genome. This review describes mammalian cell culture use in bioprocessing, the importance of obtaining CHO cell line genetic sequences, and the current status of sequencing efforts. Furthermore, transcriptomic techniques and gene expression tools are presented, and case studies exploring genomic techniques and applications aimed to improve mammalian bioprocess performance are reviewed. Finally, future implications of genomic advances are surmised.
authors.affiliation: Chemical Engineering and Delaware Biotechnology Institute, University of Delaware, 15 Innovation Way, Newark, DE 19711, USA.
authors.forename: Diane M
authors.initials: DM
authors.lastname: Wuest
authors.forename: Sarah W
authors.initials: SW
authors.lastname: Harcum
authors.forename: Kelvin H
authors.initials: KH
authors.lastname: Lee
mesh_terms: D000818:Animals; D019149:Bioreactors; D016466:CHO Cells / Q000378:metabolism*; D006224:Cricetinae; D003412:Cricetulus / Q000235:genetics*; D015870:Gene Expression; D016678:Genome; D008322:Mammals; D011994:Recombinant Proteins / Q000235:genetics* / Q000378:metabolism*; D017422:Sequence Analysis, DNA / Q000379:methods
chemical_list: D011994:Recombinant Proteins
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