title: The genome portal of the Department of Energy Joint Genome Institute.
abstract: The Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility with massive-scale DNA sequencing and analysis capabilities dedicated to advancing genomics for bioenergy and environmental applications. Beyond generating tens of trillions of DNA bases annually, the Institute develops and maintains data management systems and specialized analytical capabilities to manage and interpret complex genomic data sets, and to enable an expanding community of users around the world to analyze these data in different contexts over the web. The JGI Genome Portal (http://genome.jgi.doe.gov) provides a unified access point to all JGI genomic databases and analytical tools. A user can find all DOE JGI sequencing projects and their status, search for and download assemblies and annotations of sequenced genomes, and interactively explore those genomes and compare them with other sequenced microbes, fungi, plants or metagenomes using specialized systems tailored to each particular class of organisms. We describe here the general organization of the Genome Portal and the most recent addition, MycoCosm (http://jgi.doe.gov/fungi), a new integrated fungal genomics resource.
authors: Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, USA. ivgrigoriev@lbl.gov
authors: Igor V
authors: IV
authors: Grigoriev
authors: Henrik
authors: H
authors: Nordberg
authors: Igor
authors: I
authors: Shabalov
authors: Andrea
authors: A
authors: Aerts
authors: Mike
authors: M
authors: Cantor
authors: David
authors: D
authors: Goodstein
authors: Alan
authors: A
authors: Kuo
authors: Simon
authors: S
authors: Minovitsky
authors: Roman
authors: R
authors: Nikitin
authors: Robin A
authors: RA
authors: Ohm
authors: Robert
authors: R
authors: Otillar
authors: Alex
authors: A
authors: Poliakov
authors: Igor
authors: I
authors: Ratnere
authors: Robert
authors: R
authors: Riley
authors: Tatyana
authors: T
authors: Smirnova
authors: Daniel
authors: D
authors: Rokhsar
authors: Inna
authors: I
authors: Dubchak
mesh_terms: D016000:Cluster Analysis; D030541:Databases, Genetic; D016681:Genome, Fungal; D023281:Genomics; D020407:Internet; D058977:Molecular Sequence Annotation; D017422:Sequence Analysis, DNA; D012984:Software; D018511:Systems Integration