title: Automated three-dimensional microbial sensing and recognition using digital holography and statistical sampling.
abstract: We overview an approach to providing automated three-dimensional (3D) sensing and recognition of biological micro/nanoorganisms integrating Gabor digital holographic microscopy and statistical sampling methods. For 3D data acquisition of biological specimens, a coherent beam propagates through the specimen and its transversely and longitudinally magnified diffraction pattern observed by the microscope objective is optically recorded with an image sensor array interfaced with a computer. 3D visualization of the biological specimen from the magnified diffraction pattern is accomplished by using the computational Fresnel propagation algorithm. For 3D recognition of the biological specimen, a watershed image segmentation algorithm is applied to automatically remove the unnecessary background parts in the reconstructed holographic image. Statistical estimation and inference algorithms are developed to the automatically segmented holographic image. Overviews of preliminary experimental results illustrate how the holographic image reconstructed from the Gabor digital hologram of biological specimen contains important information for microbial recognition.
authors.affiliation: School of Computer Engineering, Chosun University, 375 Seosuk-dong, Dong-gu, Gwangju 501-759, South Korea. inkyu.moon@chosun.ac.kr
authors.forename: Inkyu
authors.initials: I
authors.lastname: Moon
authors.forename: Faliu
authors.initials: F
authors.lastname: Yi
authors.forename: Bahram
authors.initials: B
authors.lastname: Javidi
mesh_terms: D000465:Algorithms; D001419:Bacteria / Q000737:chemistry / Q000302:isolation & purification*; D003584:Cytological Techniques; D017377:Diatoms / Q000737:chemistry / Q000302:isolation & purification; D006696:Holography; D021621:Imaging, Three-Dimensional; D008853:Microscopy; D015233:Models, Statistical; D010363:Pattern Recognition, Automated