title: htSeqTools: high-throughput sequencing quality control, processing and visualization in R.
abstract: We provide a Bioconductor package with quality assessment, processing and visualization tools for high-throughput sequencing data, with emphasis in ChIP-seq and RNA-seq studies. It includes detection of outliers and biases, inefficient immuno-precipitation and overamplification artifacts, de novo identification of read-rich genomic regions and visualization of the location and coverage of genomic region lists.
  
  
  BACKGROUND
  www.bioconductor.org.
authors.affiliation: Biostatistics and Bioinformatics Unit, Institute for Research in Biomedicine of Barcelona, Barcelona, Spain.
authors.forename: Evarist
authors.initials: E
authors.lastname: Planet
authors.forename: Camille Stephan-Otto
authors.initials: CS
authors.lastname: Attolini
authors.forename: Oscar
authors.initials: O
authors.lastname: Reina
authors.forename: Oscar
authors.initials: O
authors.lastname: Flores
authors.forename: David
authors.initials: D
authors.lastname: Rossell
mesh_terms: D023281:Genomics; D059014:High-Throughput Nucleotide Sequencing / Q000379:methods*; D006801:Humans; D020407:Internet; D020411:Oligonucleotide Array Sequence Analysis; D011786:Quality Control; D012441:Saccharomyces cerevisiae / Q000235:genetics; D012984:Software