title: Graph-based methods for discovery browsing with semantic predications.
abstract: We present an extension to literature-based discovery that goes beyond making discoveries to a principled way of navigating through selected aspects of some biomedical domain. The method is a type of "discovery browsing" that guides the user through the research literature on a specified phenomenon. Poorly understood relationships may be explored through novel points of view, and potentially interesting relationships need not be known ahead of time. In a process of "cooperative reciprocity" the user iteratively focuses system output, thus controlling the large number of relationships often generated in literature-based discovery systems. The underlying technology exploits SemRep semantic predications represented as a graph of interconnected nodes (predication arguments) and edges (predicates). The system suggests paths in this graph, which represent chains of relationships. The methodology is illustrated with depressive disorder and focuses on the interaction of inflammation, circadian phenomena, and the neurotransmitter norepinephrine. Insight provided may contribute to enhanced understanding of the pathophysiology, treatment, and prevention of this disorder.
authors.affiliation: Technical University of Denmark, DTU Informatics, Kongens Lyngby, DK-2800, Denmark.
authors.forename: Bartłomiej
authors.initials: B
authors.lastname: Wilkowski
authors.forename: Marcelo
authors.initials: M
authors.lastname: Fiszman
authors.forename: Christopher M
authors.initials: CM
authors.lastname: Miller
authors.forename: Dimitar
authors.initials: D
authors.lastname: Hristovski
authors.forename: Sivaram
authors.initials: S
authors.lastname: Arabandi
authors.forename: Graciela
authors.initials: G
authors.lastname: Rosemblat
authors.forename: Thomas C
authors.initials: TC
authors.lastname: Rindflesch
mesh_terms: D003866:Depressive Disorder / Q000503:physiopathology*; D006801:Humans; D016247:Information Storage and Retrieval / Q000379:methods*; D016239:MEDLINE; D009323:Natural Language Processing; D012660:Semantics; D017432:Unified Medical Language System