title: Development of a loop-mediated isothermal amplification method for rapid detection of porcine boca-like virus.
abstract: The porcine boca-like virus (Pbo-likeV) was recently discovered in Swedish pigs with post-weaning multisystemic wasting syndrome (PMWS). In this study, a loop-mediated isothermal amplification (LAMP) assay was developed for rapid, specific and sensitive detection of Pbo-likeV. A set of four primers specific for six regions of Pbo-likeV VP1/2 genes was designed with the online software. The reaction temperature and time were optimized to 65 °C and 60 min, respectively. LAMP products were detected by agarose gel electrophoresis or by visual inspection of a color change due to addition of fluorescent dye. The developed method was highly specific for detection of Pbo-likeV, and no cross-reaction was observed with other swine viruses, such as porcine reproductive and respiratory syndrome virus (PRRSV), porcine circovirus type 2 (PCV2), porcine parvovirus (PPV) and classic swine fever virus (CSFV) found commonly in China. The lower detection limit of the LAMP assay was approximately 10 copies per reaction, and it was 100 times more sensitive than that of conventional PCR. Furthermore, the efficiency of LAMP for detection Pbo-likeV in clinical samples was comparable to PCR and sequencing. These results showed that the LAMP assay is a simple, rapid, sensitive and specific technique for detection of Pbo-likeV, and the procedure of LAMP does not rely on any special equipment. It has capacity for the detection of Pbo-likeV both in the laboratory and on farms.
authors.affiliation: Institute of Veterinary Medicine, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, Jiangsu Province, China. libinana@126.com
authors.forename: Bin
authors.initials: B
authors.lastname: Li
authors.forename: Jun-jie
authors.initials: JJ
authors.lastname: Ma
authors.forename: Shao-bo
authors.initials: SB
authors.lastname: Xiao
authors.forename: Xue-han
authors.initials: XH
authors.lastname: Zhang
authors.forename: Li-bin
authors.initials: LB
authors.lastname: Wen
authors.forename: Li
authors.initials: L
authors.lastname: Mao
authors.forename: Yan-xiu
authors.initials: YX
authors.lastname: Ni
authors.forename: Rong-li
authors.initials: RL
authors.lastname: Guo
authors.forename: Jun-ming
authors.initials: JM
authors.lastname: Zhou
authors.forename: Li-xin
authors.initials: LX
authors.lastname: Lv
authors.forename: Kong-wang
authors.initials: KW
authors.lastname: He
mesh_terms: D000818:Animals; D052660:Bocavirus / Q000302:isolation & purification*; D002681:China; D017931:DNA Primers / Q000235:genetics; D004279:DNA, Viral / Q000737:chemistry / Q000235:genetics; D025202:Molecular Diagnostic Techniques / Q000379:methods*; D008969:Molecular Sequence Data; D021141:Nucleic Acid Amplification Techniques / Q000379:methods*; D010322:Parvoviridae Infections / Q000662:veterinary* / Q000821:virology; D012680:Sensitivity and Specificity; D017422:Sequence Analysis, DNA; D013552:Swine; D013553:Swine Diseases / Q000175:diagnosis* / Q000821:virology; D014730:Veterinary Medicine / Q000379:methods*; D014773:Virology / Q000379:methods*
chemical_list: D017931:DNA Primers; D004279:DNA, Viral