title: An effective measure for assessing the quality of biclusters.
abstract: Biclustering is becoming a popular technique for the study of gene expression data. This is mainly due to the capability of biclustering to address the data using various dimensions simultaneously, as opposed to clustering, which can use only one dimension at the time. Different heuristics have been proposed in order to discover interesting biclusters in data. Such heuristics have one common characteristic: they are guided by a measure that determines the quality of biclusters. It follows that defining such a measure is probably the most important aspect. One of the popular quality measure is the mean squared residue (MSR). However, it has been proven that MSR fails at identifying some kind of patterns. This motivates us to introduce a novel measure, called virtual error (VE), that overcomes this limitation. Results obtained by using VE confirm that it can identify interesting patterns that could not be found by MSR.
authors.affiliation: School of Engineering, Pablo de Olavide University, Ctra. Utrera s/n, Seville, Spain. fdivina@upo.es
authors.forename: Federico
authors.initials: F
authors.lastname: Divina
authors.forename: Beatriz
authors.initials: B
authors.lastname: Pontes
authors.forename: Raúl
authors.initials: R
authors.lastname: Giráldez
authors.forename: Jesús S
authors.initials: JS
authors.lastname: Aguilar-Ruiz
mesh_terms: D000465:Algorithms; D016000:Cluster Analysis; D019295:Computational Biology / Q000379:methods*; D030541:Databases, Genetic; D020869:Gene Expression Profiling / Q000379:methods*; D006801:Humans