title: Visual characterization and diversity quantification of chemical libraries: 2. Analysis and selection of size-independent, subspace-specific diversity indices.
abstract: High Throughput Screening (HTS) is a standard technique widely used to find hit compounds in drug discovery projects. The high costs associated with such experiments have highlighted the need to carefully design screening libraries in order to avoid wasting resources. Molecular diversity is an established concept that has been used to this end for many years. In this article, a new approach to quantify the molecular diversity of screening libraries is presented. The approach is based on the Delimited Reference Chemical Subspace (DRCS) methodology, a new method that can be used to delimit the densest subspace spanned by a reference library in a reduced 2D continuous space. A total of 22 diversity indices were implemented or adapted to this methodology, which is used here to remove outliers and obtain a relevant cell-based partition of the subspace. The behavior of these indices was assessed and compared in various extreme situations and with respect to a set of theoretical rules that a diversity function should satisfy when libraries of different sizes have to be compared. Some gold standard indices are found inappropriate in such a context, while none of the tested indices behave perfectly in all cases. Five DRCS-based indices accounting for different aspects of diversity were finally selected, and a simple framework is proposed to use them effectively. Various libraries have been profiled with respect to more specific subspaces, which further illustrate the interest of the method.
authors.affiliation: Institut de Chimie Organique et Analytique (ICOA), Université d'Orléans-CNRS, UMR 7311 B.P. 6759 Rue de Chartres, 45067 Orléans Cedex 2, France.
authors.forename: Lionel
authors.initials: L
authors.lastname: Colliandre
authors.forename: Vincent
authors.initials: V
authors.lastname: Le Guilloux
authors.forename: Stephane
authors.initials: S
authors.lastname: Bourg
authors.forename: Luc
authors.initials: L
authors.lastname: Morin-Allory
mesh_terms: D004353:Drug Evaluation, Preclinical; D008722:Methods; D054852:Small Molecule Libraries
chemical_list: D054852:Small Molecule Libraries