CytoSEED: a Cytoscape plugin for viewing, manipulating and analyzing metabolic models created by the Model SEED.
CytoSEED is a Cytoscape plugin for viewing, manipulating and analyzing metabolic models created using the Model SEED. The CytoSEED plugin enables users of the Model SEED to create informative visualizations of the reaction networks generated for their organisms of interest. These visualizations are useful for understanding organism-specific biochemistry and for highlighting the results of flux variability analysis experiments.
Computer Science Department, Hope College, Holland, MI 49423, USA. dejongh@hope.edu
Matthew
M
DeJongh
Benjamin
B
Bockstege
Paul
P
Frybarger
Nicholas
N
Hazekamp
Joshua
J
Kammeraad
Travis
T
McGeehan
D053858:Metabolic Networks and Pathways; D008954:Models, Biological; D009174:Mycoplasma / Q000166:cytology / Q000378:metabolism; D011387:Prokaryotic Cells / Q000378:metabolism*; D012984:Software