NetSeed: a network-based reverse-ecology tool for calculating the metabolic interface of an organism with its environment.
NetSeed is a web tool and Perl module for analyzing the topology of metabolic networks and calculating the set of exogenously acquired compounds. NetSeed is based on the seed detection algorithm, developed and validated in previous studies.


BACKGROUND
The NetSeed web-based tool, open-source Perl module, examples and documentation are freely available online at: http://depts.washington.edu/elbogs/NetSeed.
Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Rogan
R
Carr
Elhanan
E
Borenstein
D000465:Algorithms; D001419:Bacteria / Q000378:metabolism*; D004463:Ecology; D004777:Environment; D020407:Internet; D053858:Metabolic Networks and Pathways; D056265:Microbial Interactions; D012984:Software