title: Cell-type-based analysis of microRNA profiles in the mouse brain.
abstract: MicroRNAs (miRNA) are implicated in brain development and function but the underlying mechanisms have been difficult to study in part due to the cellular heterogeneity in neural circuits. To systematically analyze miRNA expression in neurons, we have established a miRNA tagging and affinity-purification (miRAP) method that is targeted to cell types through the Cre-loxP binary system in mice. Our studies of the neocortex and cerebellum reveal the expression of a large fraction of known miRNAs with distinct profiles in glutamatergic and GABAergic neurons and subtypes of GABAergic neurons. We further detected putative novel miRNAs, tissue or cell type-specific strand selection of miRNAs, and miRNA editing. Our method thus will facilitate a systematic analysis of miRNA expression and regulation in specific neuron types in the context of neuronal development, physiology, plasticity, pathology, and disease models, and is generally applicable to other cell types and tissues.
authors.affiliation: Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA; Genetics Program, State University of New York, Stony Brook, NY 11790, USA.
authors.forename: Miao
authors.initials: M
authors.lastname: He
authors.forename: Yu
authors.initials: Y
authors.lastname: Liu
authors.forename: Xiaowo
authors.initials: X
authors.lastname: Wang
authors.forename: Michael Q
authors.initials: MQ
authors.lastname: Zhang
authors.forename: Gregory J
authors.initials: GJ
authors.lastname: Hannon
authors.forename: Z Josh
authors.initials: ZJ
authors.lastname: Huang
mesh_terms: D000818:Animals; D060565:Argonaute Proteins / Q000235:genetics; D001921:Brain / Q000166:cytology*; D054732:Calcium-Calmodulin-Dependent Protein Kinase Type 2 / Q000235:genetics; D002874:Chromosome Mapping; D005434:Flow Cytometry; D020869:Gene Expression Profiling; D049452:Green Fluorescent Proteins / Q000235:genetics; D051379:Mice; D008810:Mice, Inbred C57BL; D008822:Mice, Transgenic; D035683:MicroRNAs / Q000235:genetics* / Q000378:metabolism; D018613:Microscopy, Confocal; D008958:Models, Molecular; D009474:Neurons / Q000145:classification* / Q000378:metabolism*; D020411:Oligonucleotide Array Sequence Analysis; D017393:RNA Editing
chemical_list: C526735:Ago2 protein, mouse; D060565:Argonaute Proteins; D035683:MicroRNAs; D049452:Green Fluorescent Proteins; D054732:Calcium-Calmodulin-Dependent Protein Kinase Type 2; C517671:Camk2a protein, mouse