title: The causes of epistasis in genetic networks.
abstract: Epistasis refers to the nonadditive interactions between genes in determining phenotypes. Considerable efforts have shown that, even for a given organism, epistasis may vary both in intensity and sign. Recent comparative studies supported that the overall sign of epistasis switches from positive to negative as the complexity of an organism increases, and it has been hypothesized that this change shall be a consequence of the underlying gene network properties. Why should this be the case? What characteristics of genetic networks determine the sign of epistasis? Here we show, by evolving genetic networks that differ in their complexity and robustness against perturbations but that perform the same tasks, that robustness increased with complexity and that epistasis was positive for small nonrobust networks but negative for large robust ones. Our results indicate that robustness and negative epistasis emerge as a consequence of the existence of redundant elements in regulatory structures of genetic networks and that the correlation between complexity and epistasis is a byproduct of such redundancy, allowing for the decoupling of epistasis from the underlying network complexity.
authors.affiliation: Complex Systems Laboratory, ICREA-Universitat Pompeu Fabra, 08003 Barcelona, Spain.
authors.forename: Javier
authors.initials: J
authors.lastname: Macía
authors.forename: Ricard V
authors.initials: RV
authors.lastname: Solé
authors.forename: Santiago F
authors.initials: SF
authors.lastname: Elena
mesh_terms: D000465:Algorithms; D004843:Epistasis, Genetic; D004926:Escherichia coli / Q000235:genetics; D053263:Gene Regulatory Networks; D008957:Models, Genetic; D012441:Saccharomyces cerevisiae / Q000235:genetics