Effects of static and temporally fluctuating tensions on semiflexible polymer looping.
Biopolymer looping is a dynamic process that occurs ubiquitously in cells for gene regulation, protein folding, etc. In cellular environments, biopolymers are often subject to tensions which are either static or temporally fluctuating far away from equilibrium. We study the dynamics of semiflexible polymer looping in the presence of such tensions by using Brownian dynamics simulation combined with an analytical theory. We show a minute tension dramatically changes the looping time, especially for long chains. Considering a dichotomically flipping noise as a simple example of the nonequilibrium tension, we find the phenomenon of resonant activation, where the looping time can be the minimum at an optimal flipping time. We discuss our results in connection with recent experiments.
Department of Physics and PCTP, Pohang University of Science and Technology, Pohang 790-784, South Korea.
Jaeoh
J
Shin
Wokyung
W
Sung
D001704:Biopolymers / Q000737:chemistry*; D008954:Models, Biological; D013500:Surface Tension
D001704:Biopolymers