Boolean models of biosurfactants production in Pseudomonas fluorescens.
Cyclolipopeptides (CLPs) are biosurfactants produced by numerous Pseudomonas fluorescens strains. CLP production is known to be regulated at least by the GacA/GacS two-component pathway, but the full regulatory network is yet largely unknown. In the clinical strain MFN1032, CLP production is abolished by a mutation in the phospholipase C gene (plcC) and not restored by plcC complementation. Their production is also subject to phenotypic variation. We used a modelling approach with Boolean networks, which takes into account all these observations concerning CLP production without any assumption on the topology of the considered network. Intensive computation yielded numerous models that satisfy these properties. All models minimizing the number of components point to a bistability in CLP production, which requires the presence of a yet unknown key self-inducible regulator. Furthermore, all suggest that a set of yet unexplained phenotypic variants might also be due to this epigenetic switch. The simplest of these Boolean networks was used to propose a biological regulatory network for CLP production. This modelling approach has allowed a possible regulation to be unravelled and an unusual behaviour of CLP production in P. fluorescens to be explained.
Laboratoire d'Informatique, Signaux et Systèmes Complexes de Sophia-Antipolis (I3S), Université de Nice-Sophia Antipolis and Centre National de la Recherche Scientifique, Sophia-Antipolis, France. richard@i3s.unice.fr
Adrien
A
Richard
Gaelle
G
Rossignol
Jean-Paul
JP
Comet
Gilles
G
Bernot
Jannine
J
Guespin-Michel
Annabelle
A
Merieau
D001426:Bacterial Proteins / Q000378:metabolism; D053263:Gene Regulatory Networks; D006461:Hemolysis; D055666:Lipopeptides / Q000378:metabolism; D008954:Models, Biological; D010456:Peptides, Cyclic / Q000378:metabolism; D011551:Pseudomonas fluorescens / Q000235:genetics / Q000378:metabolism*; D013501:Surface-Active Agents / Q000378:metabolism*
D001426:Bacterial Proteins; D055666:Lipopeptides; D010456:Peptides, Cyclic; D013501:Surface-Active Agents