title: On the effect of thermodynamic equilibrium on the assembly efficiency of complex multi-layered virus-like particles (VLP): the case of rotavirus VLP.
abstract: Previous studies have reported the production of malformed virus-like-particles (VLP) in recombinant host systems. Here we computationally investigate the case of a large triple-layered rotavirus VLP (RLP). In vitro assembly, disassembly and reassembly data provides strong evidence of microscopic reversibility of RLP assembly. Light scattering experimental data also evidences a slow and reversible assembly untypical of kinetic traps, thus further strengthening the fidelity of a thermodynamically controlled assembly. In silico analysis further reveals that under favourable conditions particles distribution is dominated by structural subunits and completely built icosahedra, while other intermediates are present only at residual concentrations. Except for harshly unfavourable conditions, assembly yield is maximised when proteins are provided in the same VLP protein mass composition. The assembly yield decreases abruptly due to thermodynamic equilibrium when the VLP protein mass composition is not obeyed. The latter effect is more pronounced the higher the Gibbs free energy of subunit association is and the more complex the particle is. Overall this study shows that the correct formation of complex multi-layered VLPs is restricted to a narrow range of association energies and protein concentrations, thus the choice of the host system is critical for successful assembly. Likewise, the dynamic control of intracellular protein expression rates becomes very important to minimize wasted proteins.
authors.affiliation: Instituto de Tecnologia Química e Biológica-Universidade Nova de Lisboa (ITQB-UNL), Oeiras, Portugal.
authors.forename: António
authors.initials: A
authors.lastname: Roldão
authors.forename: Maria Candida M
authors.initials: MC
authors.lastname: Mellado
authors.forename: J C
authors.initials: JC
authors.lastname: Lima
authors.forename: Manuel J T
authors.initials: MJ
authors.lastname: Carrondo
authors.forename: Paula M
authors.initials: PM
authors.lastname: Alves
authors.forename: R
authors.initials: R
authors.lastname: Oliveira
mesh_terms: D000818:Animals; D002213:Capsid / Q000737:chemistry; D019295:Computational Biology / Q000379:methods*; D007313:Insecta; D007700:Kinetics; D008027:Light; D015233:Models, Statistical; D008962:Models, Theoretical; D012401:Rotavirus / Q000502:physiology*; D012542:Scattering, Radiation; D013696:Temperature; D013816:Thermodynamics; D014764:Viral Proteins / Q000096:biosynthesis; D019065:Virus Assembly
chemical_list: D014764:Viral Proteins