title: Systems biology approach to bioremediation.
abstract: Bioremediation has historically been approached as a 'black box' in terms of our fundamental understanding. Thus it succeeds and fails, seldom without a complete understanding of why. Systems biology is an integrated research approach to study complex biological systems, by investigating interactions and networks at the molecular, cellular, community, and ecosystem level. The knowledge of these interactions within individual components is fundamental to understanding the dynamics of the ecosystem under investigation. Understanding and modeling functional microbial community structure and stress responses in environments at all levels have tremendous implications for our fundamental understanding of hydrobiogeochemical processes and the potential for making bioremediation breakthroughs and illuminating the 'black box'.
authors.affiliation: Ecology Department, Earth Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
authors.forename: Romy
authors.initials: R
authors.lastname: Chakraborty
authors.forename: Cindy H
authors.initials: CH
authors.lastname: Wu
authors.forename: Terry C
authors.initials: TC
authors.lastname: Hazen
mesh_terms: D001419:Bacteria / Q000145:classification / Q000302:isolation & purification / Q000378:metabolism; D001673:Biodegradation, Environmental; D003247:Conservation of Natural Resources; D017753:Ecosystem; D004785:Environmental Pollutants / Q000378:metabolism; D049490:Systems Biology / Q000379:methods*
chemical_list: D004785:Environmental Pollutants