title: Distribution patterns and phylogeny of marine stramenopiles in the north pacific ocean.
abstract: Marine stramenopiles (MASTs) are a diverse suite of eukaryotic microbes found in marine environments. Several MAST lineages are thought to contain heterotrophic nanoflagellates. However, MASTs remain uncultured and data on distributions and trophic modes are limited. We investigated MASTs in provinces on the west and east sides of the North Pacific Subtropical Gyre, specifically the East China Sea (ECS) and the California Current system (CALC). For each province, DNA was sampled from three zones: coastal, mesotrophic transitional, and more oligotrophic euphotic waters. Along with diatoms, chrysophytes, and other stramenopiles, sequences were recovered from nine MAST lineages in the six ECS and four CALC 18S rRNA gene clone libraries. All but one of these libraries were from surface samples. MAST clusters 1, 3, 7, 8, and 11 were identified in both provinces, with MAST cluster 3 (MAST-3) being found the most frequently. Additionally, MAST-2 was detected in the ECS and MAST-4, -9, and -12 were detected in the CALC. Phylogenetic analysis indicated that some subclades within these lineages differ along latitudinal gradients. MAST-1A, -1B, and -1C and MAST-4 size and abundance estimates obtained using fluorescence in situ hybridization on 79 spring and summer ECS samples showed a negative correlation between size of MAST-1B and MAST-4 cells and temperature. MAST-1A was rarely detected, but MAST-1B and -1C and MAST-4 were abundant in summer and MAST-1C and MAST-4 were more so at the coast, with maximum abundances of 543 and 1,896 cells ml(-1), respectively. MAST-4 and Synechococcus abundances were correlated, and experimental work showed that MAST-4 ingests Synechococcus. Together with previous studies, this study helps refine hypotheses on distribution and trophic modes of MAST lineages.
authors.affiliation: Institute of Environmental Biology and Fishery Science, National Taiwan Ocean University, Keelung, Taiwan, Republic of China.
authors.forename: Yun-Chi
authors.initials: YC
authors.lastname: Lin
authors.forename: Tracy
authors.initials: T
authors.lastname: Campbell
authors.forename: Chih-Ching
authors.initials: CC
authors.lastname: Chung
authors.forename: Gwo-Ching
authors.initials: GC
authors.lastname: Gong
authors.forename: Kuo-Ping
authors.initials: KP
authors.lastname: Chiang
authors.forename: Alexandra Z
authors.initials: AZ
authors.lastname: Worden
mesh_terms: D044822:Biodiversity; D002140:California; D002681:China; D016000:Cluster Analysis; D008969:Molecular Sequence Data; D010140:Pacific Ocean; D058974:Phylogeography; D012623:Seawater / Q000382:microbiology*; D017422:Sequence Analysis, DNA; D058009:Stramenopiles / Q000145:classification* / Q000235:genetics / Q000302:isolation & purification*