title: Dynamics and processing in finite self-similar networks.
abstract: A common feature of biological networks is the geometrical property of self-similarity. Molecular regulatory networks through to circulatory systems, nervous systems, social systems and ecological trophic networks show self-similar connectivity at multiple scales. We analyse the relationship between topology and signalling in contrasting classes of such topologies. We find that networks differ in their ability to contain or propagate signals between arbitrary nodes in a network depending on whether they possess branching or loop-like features. Networks also differ in how they respond to noise, such that one allows for greater integration at high noise, and this performance is reversed at low noise. Surprisingly, small-world topologies, with diameters logarithmic in system size, have slower dynamical time scales, and may be less integrated (more modular) than networks with longer path lengths. All of these phenomena are essentially mesoscopic, vanishing in the infinite limit but producing strong effects at sizes and time scales relevant to biology.
authors.affiliation: Santa Fe Institute, Santa Fe, NM 87501, USA. simon@santafe.edu
authors.forename: Simon
authors.initials: S
authors.lastname: DeDeo
authors.forename: David C
authors.initials: DC
authors.lastname: Krakauer
mesh_terms: D008954:Models, Biological; D015398:Signal Transduction