title: Liver segmentation in contrast enhanced CT data using graph cuts and interactive 3D segmentation refinement methods.
abstract: OBJECTIVE
  Liver segmentation is an important prerequisite for the assessment of liver cancer treatment options like tumor resection, image-guided radiation therapy (IGRT), radiofrequency ablation, etc. The purpose of this work was to evaluate a new approach for liver segmentation.
  
  
  METHODS
  A graph cuts segmentation method was combined with a three-dimensional virtual reality based segmentation refinement approach. The developed interactive segmentation system allowed the user to manipulate volume chunks and∕or surfaces instead of 2D contours in cross-sectional images (i.e, slice-by-slice). The method was evaluated on twenty routinely acquired portal-phase contrast enhanced multislice computed tomography (CT) data sets. An independent reference was generated by utilizing a currently clinically utilized slice-by-slice segmentation method. After 1 h of introduction to the developed segmentation system, three experts were asked to segment all twenty data sets with the proposed method.
  
  
  RESULTS
  Compared to the independent standard, the relative volumetric segmentation overlap error averaged over all three experts and all twenty data sets was 3.74%. Liver segmentation required on average 16 min of user interaction per case. The calculated relative volumetric overlap errors were not found to be significantly different [analysis of variance (ANOVA) test, p = 0.82] between experts who utilized the proposed 3D system. In contrast, the time required by each expert for segmentation was found to be significantly different (ANOVA test, p = 0.0009). Major differences between generated segmentations and independent references were observed in areas were vessels enter or leave the liver and no accepted criteria for defining liver boundaries exist. In comparison, slice-by-slice based generation of the independent standard utilizing a live wire tool took 70.1 min on average. A standard 2D segmentation refinement approach applied to all twenty data sets required on average 38.2 min of user interaction and resulted in statistically not significantly different segmentation error indices (ANOVA test, significance level of 0.05).
  
  
  CONCLUSIONS
  All three experts were able to produce liver segmentations with low error rates. User interaction time savings of up to 71% compared to a 2D refinement approach demonstrate the utility and potential of our approach. The system offers a range of different tools to manipulate segmentation results, and some users might benefit from a longer learning phase to develop efficient segmentation refinement strategies. The presented approach represents a generally applicable segmentation approach that can be applied to many medical image segmentation problems.
authors.affiliation: Department of Electrical and Computer Engineering, The University of Iowa, Iowa City, IA 52242, USA. reinhard-beichel@uiowa.edu
authors.forename: Reinhard
authors.initials: R
authors.lastname: Beichel
authors.forename: Alexander
authors.initials: A
authors.lastname: Bornik
authors.forename: Christian
authors.initials: C
authors.lastname: Bauer
authors.forename: Erich
authors.initials: E
authors.lastname: Sorantin
mesh_terms: D003287:Contrast Media; D005240:Feasibility Studies; D006801:Humans; D021621:Imaging, Three-Dimensional / Q000295:instrumentation / Q000379:methods* / Q000592:standards; D008099:Liver / Q000000981:diagnostic imaging*; D012015:Reference Standards; D014057:Tomography, X-Ray Computed / Q000379:methods*
chemical_list: D003287:Contrast Media