title: Ammonia transformations and abundance of ammonia oxidizers in a clay soil underlying a manure pond.
abstract: Unlined manure ponds are constructed on clay soil worldwide to manage farm waste. Seepage of ammonia-rich liquor into underlying soil layers contributes to groundwater contamination by nitrate. To identify the possible processes that lead to the production of nitrate from ammonia in this oxygen-limited environment, we studied the diversity and abundance of ammonia-transforming microorganisms under an unlined manure pond. The numbers of ammonia-oxidizing bacteria and anammox bacteria were most abundant in the top of the soil profile and decreased significantly with depth (0.5 m), correlating with soil pore-water ammonia concentrations and soil ammonia concentrations, respectively. On the other hand, the numbers of ammonia-oxidizing archaea were relatively constant throughout the soil profile (10(7) amoA copies per g(soil)). Nitrite-oxidizing bacteria were detected mainly in the top 0.2 m. The results suggest that nitrate accumulation in the vadose zone under the manure pond could be the result of complete aerobic nitrification (ammonia oxidation to nitrate) and could exist as a byproduct of anammox activity. While the majority of the nitrogen was removed within the 0.5-m soil section, possibly by combined anammox and heterotrophic denitrification, a fraction of the produced nitrate leached into the groundwater.
authors.affiliation: Department of Environmental Hydrology & Microbiology, Zuckerberg Institute for Water Research, Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Sede Boqer, Israel.
authors.forename: Yonatan
authors.initials: Y
authors.lastname: Sher
authors.forename: Shahar
authors.initials: S
authors.lastname: Baram
authors.forename: Ofer
authors.initials: O
authors.lastname: Dahan
authors.forename: Zeev
authors.initials: Z
authors.lastname: Ronen
authors.forename: Ali
authors.initials: A
authors.lastname: Nejidat
mesh_terms: D000538:Aluminum Silicates; D000641:Ammonia / Q000378:metabolism*; D001105:Archaea / Q000145:classification / Q000235:genetics / Q000378:metabolism*; D001419:Bacteria / Q000145:classification / Q000235:genetics / Q000378:metabolism*; D000077215:Clay; D008372:Manure / Q000382:microbiology*; D009566:Nitrates / Q000378:metabolism; D058465:Nitrification; D009573:Nitrites / Q000378:metabolism; D009584:Nitrogen / Q000378:metabolism; D010084:Oxidation-Reduction; D061005:Ponds; D012987:Soil / Q000737:chemistry; D012988:Soil Microbiology
chemical_list: D000538:Aluminum Silicates; D008372:Manure; D009566:Nitrates; D009573:Nitrites; D012987:Soil; D000641:Ammonia; D009584:Nitrogen; D000077215:Clay