title: The Bluejay genome browser.
abstract: The Bluejay genome browser is a stand-alone visualization tool for the multi-scale viewing of annotated genomes and other genomic elements. Bluejay allows users to customize display features to suit their needs, and produces publication-quality graphics. Bluejay provides a multitude of ways to interrelate biological data at the genome scale. Users can load gene expression data into a genome display for expression visualization in context. Multiple genomes can be compared concurrently, including time series expression data, based on Gene Ontology labels. External, context-sensitive biological Web Services are linked to the displayed genomic elements ad hoc for in-depth genomic data analysis and interpretation. Users can mark multiple points of interest in a genome by creating waypoints, and exploit them for easy navigation of single or multiple genomes. Using this comprehensive visual environment, users can study a gene not just in relation to its genome, but also its transcriptome and evolutionary origins. Written in Java, Bluejay is platform-independent and is freely available from http://bluejay.ucalgary.ca.
authors.affiliation: Visual Genomics Centre, Faculty of Medicine, University of Calgary, Calgary, Alberta, Canada.
authors.forename: Jung
authors.initials: J
authors.lastname: Soh
authors.forename: Paul M K
authors.initials: PM
authors.lastname: Gordon
authors.forename: Christoph W
authors.initials: CW
authors.lastname: Sensen
mesh_terms: D003196:Computer Graphics; D030541:Databases, Genetic; D015870:Gene Expression; D016678:Genome; D023281:Genomics; D012984:Software; D059467:Transcriptome