title: Structure of sodiated polyglycines.
abstract: The intrinsic folding of peptides about a sodium ion has been investigated in detail by using infrared multiple photon dissociation (IRMPD) spectroscopy and a combination of theoretical methods. IRMPD spectroscopy was carried out on sodiated polyglycines G(n)-Na(+) (n=2-8), in both the fingerprint and N-H/O-H stretching regions. Interplay between experimental and computational approaches (classical and quantum) enables us to decipher most structural details. The most stable structures of the small peptides up to G(6)-Na(+) maximize metal-peptide interactions with all peptidic C=O groups bound to sodium. In addition, direct interactions between peptide termini are possible for G(6)-Na(+) and larger polyglycines. The increased flexibility of larger peptides leads to more complex folding and internal peptide structuration through γ or β turns. A structural transition is found to occur between G(6)-Na(+) and G(7)-Na(+), leading to a structure with sodium coordination that becomes tri-dimensional for the latter. This transition was confirmed by H/D exchange experiments on G(n)-Na(+) (n=3-8). The most favorable hydrogen-bonding pattern in G(8)-Na(+) involves direct interactions between the peptide termini and opens the way to salt-bridge formation; however, there is only good agreement between experimental and computational data over the entire spectral range for the charge solvation isomer.
authors.affiliation: Laboratoire des Mécanismes Réactionnels, Ecole Polytechnique, CNRS, 91128 Palaiseau Cedex, France.
authors.forename: O Petru
authors.initials: OP
authors.lastname: Balaj
authors.forename: David
authors.initials: D
authors.lastname: Semrouni
authors.forename: Vincent
authors.initials: V
authors.lastname: Steinmetz
authors.forename: Edith
authors.initials: E
authors.lastname: Nicol
authors.forename: Carine
authors.initials: C
authors.lastname: Clavaguéra
authors.forename: Gilles
authors.initials: G
authors.lastname: Ohanessian
mesh_terms: D005998:Glycine / Q000031:analogs & derivatives* / Q000737:chemistry*; D006860:Hydrogen Bonding; D007477:Ions / Q000737:chemistry*; D007536:Isomerism; D007700:Kinetics; D008958:Models, Molecular; D010455:Peptides / Q000737:chemistry*; D012964:Sodium / Q000737:chemistry*; D012996:Solutions; D013055:Spectrophotometry, Infrared
chemical_list: D007477:Ions; D010455:Peptides; D012996:Solutions; C011080:polyglycine; D012964:Sodium; D005998:Glycine