title: Natural polarizability and flexibility via explicit valency: the case of water.
abstract: As the dominant physiological solvent, water drives the folding of biological macromolecules, influences conformational changes, determines the ionization states of surface groups, actively participates in catalytic events, and provides "wires" for long-range proton transfer. Elucidation of all these roles calls for atomistic simulations. However, currently available methods do not lend themselves to efficient simulation of proton transfer events, or even polarizability and flexibility. Here, we report that an explicit account of valency can provide a unified description for the polarizability, flexibility, and dissociability of water in one intuitive and efficient setting. We call this approach LEWIS, after the chemical theory that inspires the use of valence electron pairs. In this paper, we provide details of the method, the choice of the training set, and predictions for the neat ambient liquid, with emphasis on structure, dynamics, and polarization. LEWIS water provides a good description of bulk properties, and dipolar and quadrupolar responses.
authors.affiliation: Graduate Program in Biophysics and Structural Biology, Brandeis University, Waltham, Massachusetts 02454-9110, USA.
authors.forename: Seyit
authors.initials: S
authors.lastname: Kale
authors.forename: Judith
authors.initials: J
authors.lastname: Herzfeld
mesh_terms: D003198:Computer Simulation; D008956:Models, Chemical; D011487:Protein Conformation; D011522:Protons; D012997:Solvents / Q000737:chemistry*; D013816:Thermodynamics; D014867:Water / Q000737:chemistry*
chemical_list: D011522:Protons; D012997:Solvents; D014867:Water