title: Nucleotide composition of CO1 sequences in Chelicerata (Arthropoda): detecting new mitogenomic rearrangements.
abstract: Here we study the evolution of nucleotide composition in third codon-positions of CO1 sequences of Chelicerata, using a phylogenetic framework, based on 180 taxa and three markers (CO1, 18S, and 28S rRNA; 5,218 nt). The analyses of nucleotide composition were also extended to all CO1 sequences of Chelicerata found in GenBank (1,701 taxa). The results show that most species of Chelicerata have a positive strand bias in CO1, i.e., in favor of C nucleotides, including all Amblypygi, Palpigradi, Ricinulei, Solifugae, Uropygi, and Xiphosura. However, several taxa show a negative strand bias, i.e., in favor of G nucleotides: all Scorpiones, Opisthothelae spiders and several taxa within Acari, Opiliones, Pseudoscorpiones, and Pycnogonida. Several reversals of strand-specific bias can be attributed to either a rearrangement of the control region or an inversion of a fragment containing the CO1 gene. Key taxa for which sequencing of complete mitochondrial genomes will be necessary to determine the origin and nature of mtDNA rearrangements involved in the reversals are identified. Acari, Opiliones, Pseudoscorpiones, and Pycnogonida were found to show a strong variability in nucleotide composition. In addition, both mitochondrial and nuclear genomes have been affected by higher substitution rates in Acari and Pseudoscorpiones. The results therefore indicate that these two orders are more liable to fix mutations of all types, including base substitutions, indels, and genomic rearrangements.
authors.affiliation: Département Systématique et Evolution, UMR 7205, Origine, Structure et Evolution de la Biodiversité, Muséum national d'Histoire naturelle, 57, Rue Cuvier, 75005, Paris, France.
authors.forename: Juliette
authors.initials: J
authors.lastname: Arabi
authors.forename: Mark L I
authors.initials: ML
authors.lastname: Judson
authors.forename: Louis
authors.initials: L
authors.lastname: Deharveng
authors.forename: Wilson R
authors.initials: WR
authors.lastname: Lourenço
authors.forename: Corinne
authors.initials: C
authors.lastname: Cruaud
authors.forename: Alexandre
authors.initials: A
authors.lastname: Hassanin
mesh_terms: D000818:Animals; D001181:Arthropods / Q000145:classification / Q000235:genetics*; D001482:Base Composition / Q000235:genetics*; D001483:Base Sequence; D003062:Codon / Q000235:genetics; D019295:Computational Biology; D017931:DNA Primers / Q000235:genetics; D003576:Electron Transport Complex IV / Q000235:genetics*; D019143:Evolution, Molecular; D015321:Gene Rearrangement / Q000235:genetics*; D054629:Genome, Mitochondrial / Q000235:genetics*; D008969:Molecular Sequence Data; D010802:Phylogeny; D017422:Sequence Analysis, DNA; D013045:Species Specificity
chemical_list: D003062:Codon; D017931:DNA Primers; D003576:Electron Transport Complex IV