title: Comparison of real-time quantitative PCR and culture for the diagnosis of emerging Rickettsioses.
abstract: BACKGROUND
  Isolation of Rickettsia species from skin biopsies may be replaced by PCR. We evaluated culture sensitivity compared to PCR based on sampling delay and previous antibiotic treatment.
  
  
  RESULTS
  Skin biopsies and ticks from patients with suspected Rickettsia infection were screened for Rickettsia spp. using qPCR, and positive results were amplified and sequenced for the gltA and ompA genes. Immunofluorescence for spotted fever group rickettsial antigens was done for 79 patients. All skin biopsies and only ticks that tested positive using qPCR were cultured in human embryonic lung (HEL) fibroblasts using the centrifugation-shell vial technique. Patients and ticks were classified as definitely having rickettsioses if there was direct evidence of infection with a Rickettsia sp. using culture or molecular assays or in patients if serology was positive. Data on previous antibiotic treatments were obtained for patients with rickettsiosis. Rickettsia spp. infection was diagnosed in 47 out of 145 patients (32%), 41 by PCR and 12 by culture, whereas 3 isolates were obtained from PCR negative biopsies. For 3 of the patients serology was positive although PCR and culture were negative. Rickettsia africae was the most common detected species (n = 25, [17.2%]) and isolated bacterium (n = 5, [3.4%]). The probability of isolating Rickettsia spp. was 12 times higher in untreated patients and 5.4 times higher in patients from our hometown. Rickettsia spp. was amplified in 24 out of 95 ticks (25%) and we isolated 7 R. slovaca and 1 R. raoultii from Dermacentor marginatus.
  
  
  CONCLUSIONS
  We found a positive correlation between the bacteria copies and the isolation success in skin biopsies and ticks. Culture remains critical for strain analysis but is less sensitive than serology and PCR for the diagnosis of a Rickettsia infection.
authors.forename: Emmanouil
authors.initials: E
authors.lastname: Angelakis
authors.forename: Hervé
authors.initials: H
authors.lastname: Richet
authors.forename: Jean-Marc
authors.initials: JM
authors.lastname: Rolain
authors.forename: Bernard
authors.initials: B
authors.lastname: La Scola
authors.forename: Didier
authors.initials: D
authors.lastname: Raoult
mesh_terms: D000818:Animals; D001431:Bacteriological Techniques / Q000379:methods*; D001706:Biopsy; D018929:Cell Culture Techniques / Q000379:methods; D002478:Cells, Cultured; D003870:Dermacentor / Q000382:microbiology; D005347:Fibroblasts / Q000382:microbiology; D006801:Humans; D060888:Real-Time Polymerase Chain Reaction / Q000379:methods*; D012281:Rickettsia / Q000235:genetics / Q000254:growth & development / Q000302:isolation & purification*; D012282:Rickettsia Infections / Q000175:diagnosis* / Q000382:microbiology; D012680:Sensitivity and Specificity; D012698:Serologic Tests / Q000379:methods; D012867:Skin / Q000382:microbiology; D013997:Time Factors