title: Industrial methodology for process verification in research (IMPROVER): toward systems biology verification.
abstract: BACKGROUND
  Analyses and algorithmic predictions based on high-throughput data are essential for the success of systems biology in academic and industrial settings. Organizations, such as companies and academic consortia, conduct large multi-year scientific studies that entail the collection and analysis of thousands of individual experiments, often over many physical sites and with internal and outsourced components. To extract maximum value, the interested parties need to verify the accuracy and reproducibility of data and methods before the initiation of such large multi-year studies. However, systematic and well-established verification procedures do not exist for automated collection and analysis workflows in systems biology which could lead to inaccurate conclusions.
  
  
  RESULTS
  We present here, a review of the current state of systems biology verification and a detailed methodology to address its shortcomings. This methodology named 'Industrial Methodology for Process Verification in Research' or IMPROVER, consists on evaluating a research program by dividing a workflow into smaller building blocks that are individually verified. The verification of each building block can be done internally by members of the research program or externally by 'crowd-sourcing' to an interested community. www.sbvimprover.com
  
  
  METHODS
  This methodology could become the preferred choice to verify systems biology research workflows that are becoming increasingly complex and sophisticated in industrial and academic settings.
authors.affiliation: IBM Computational Biology Center, Yorktown Heights, NY 10598, USA.
authors.forename: Pablo
authors.initials: P
authors.lastname: Meyer
authors.forename: Julia
authors.initials: J
authors.lastname: Hoeng
authors.forename: J Jeremy
authors.initials: JJ
authors.lastname: Rice
authors.forename: Raquel
authors.initials: R
authors.lastname: Norel
authors.forename: Jörg
authors.initials: J
authors.lastname: Sprengel
authors.forename: Katrin
authors.initials: K
authors.lastname: Stolle
authors.forename: Thomas
authors.initials: T
authors.lastname: Bonk
authors.forename: Stephanie
authors.initials: S
authors.lastname: Corthesy
authors.forename: Ajay
authors.initials: A
authors.lastname: Royyuru
authors.forename: Manuel C
authors.initials: MC
authors.lastname: Peitsch
authors.forename: Gustavo
authors.initials: G
authors.lastname: Stolovitzky
mesh_terms: D010380:Peer Review; D010506:Periodicals as Topic; D015203:Reproducibility of Results; D049490:Systems Biology / Q000379:methods*; D057188:Workflow