title: Effectiveness of sequencing selected exons of DNAH5 and DNAI1 in diagnosis of primary ciliary dyskinesia.
abstract: BACKGROUND
  Primary ciliary dyskinesia (PCD) is a rare genetically heterogenous condition. Mutations in DNAH5 or DNAI1 genes can be found in about a third of the patients with PCD. Increased occurrence of mutations was described in several exons of these long genes. The objective of the study was to test the sensitivity of sequencing of selected 13 exons (as compared to costly sequencing of all 100 exons of the two genes), and to determine the prevalence of the DNAH5 or DNAI1 mutations in the Czech PCD database.
  
  
  METHODS
  The Czech national PCD database has identified 31 pediatric patients, diagnosed based on clinical findings and tests on the ciliated epithelium. Twenty-seven patients from 24 families agreed on genetic testing. In the first step, direct sequencing of selected 13 exons (9 of DNAH5 and 4 of DNAI1) was performed, and then we compared its effectiveness in detecting at least one mutation with results of sequencing all 100 exons of the two genes.
  
  
  RESULTS
  The sequencing of all exons identified compound heterozygosity for PCD mutations in nine patients from eight families (DNAH5 in eight and DNAI1 in one patient), and heterozygozity for a DNAH5 mutation of uncertain functional significance in one additional patient. The first step of selected exon sequencing detected a mutation in five out of these eight families, its actual sensitivity being 62.5%, with a high predictive value. The phenotypic and clinical characteristics of all the paediatric patients with PCD are shown.
  
  
  CONCLUSIONS
  Selected exon sequencing detects at least one mutated allele in over a half of our patients who have PCD due to DNAH5 or DNAI1 mutations. To lower the costs of the genetic testing, targeted step-wise genetic testing may be a reasonable approach to detect mutations in PCD patients, especially if their phenotype is taken into account.
authors.affiliation: 2nd Faculty of Medicine, Department of Pediatrics, Charles University in Prague and University Hospital Motol, Prague, Czech Republic. jana.djakow@lfmotol.cuni.cz
authors.forename: Jana
authors.initials: J
authors.lastname: Djakow
authors.forename: Tamara
authors.initials: T
authors.lastname: Svobodová
authors.forename: Karel
authors.initials: K
authors.lastname: Hrach
authors.forename: Jiří
authors.initials: J
authors.lastname: Uhlík
authors.forename: Ondřej
authors.initials: O
authors.lastname: Cinek
authors.forename: Petr
authors.initials: P
authors.lastname: Pohunek
mesh_terms: D000328:Adult; D000483:Alleles; D056444:Axonemal Dyneins / Q000235:genetics*; D002648:Child; D015331:Cohort Studies; D003363:Cost Control; D018153:Czech Republic; D016208:Databases, Factual; D005091:Exons / Q000235:genetics*; D005820:Genetic Testing / Q000191:economics; D005838:Genotype; D006801:Humans; D007619:Kartagener Syndrome / Q000175:diagnosis* / Q000235:genetics; D009154:Mutation; D016133:Polymerase Chain Reaction; D012680:Sensitivity and Specificity; D017422:Sequence Analysis, DNA
chemical_list: C425071:DNAI1 protein, human; D056444:Axonemal Dyneins; C497507:DNAH5 protein, human