title: Detection of Mycobacterium tuberculosis in sputum by gas chromatography-mass spectrometry of methyl mycocerosates released by thermochemolysis.
abstract: Tuberculosis requires rapid diagnosis to prevent further transmission and allow prompt administration of treatment. Current methods for diagnosing pulmonary tuberculosis lack sensitivity are expensive or are extremely slow. The identification of lipids using gas chromatography- electron impact mass spectrometry (GC-EI/MS) could provide an alternative solution. We have studied mycocerosic acid components of the phthiocerol dimycocerosate (PDIM) family of lipids using thermochemolysis GC-EI/MS. To facilitate use of the technology in a routine diagnostic laboratory a simple extraction procedure was employed where PDIMs were extracted from sputum using petroleum ether, a solvent of low polarity. We also investigated a method using methanolic tetramethylammonium hydroxide, which facilitates direct transesterification of acidic components to methyl esters in the inlet of the GC-MS system. This eliminates conventional chemical manipulations allowing rapid and convenient analysis of samples. When applied to an initial set of 40 sputum samples, interpretable results were obtained for 35 samples with a sensitivity relative to culture of 94% (95%CI: 69.2,100) and a specificity of 100% (95%CI: 78.1,100). However, blinded testing of a larger set of 395 sputum samples found the assay to have a sensitivity of 61.3% (95%CI: 54.9,67.3) and a specificity of 70.6% (95%CI: 62.3,77.8) when compared to culture. Using the results obtained we developed an improved set of classification criteria, which when applied in a blinded re-analysis increased the sensitivity and specificity of the assay to 64.9% (95%CI: 58.6,70.8) and 76.2% (95%CI: 68.2,82.8) respectively. Highly variable levels of background signal were observed from individual sputum samples that inhibited interpretation of the data. The diagnostic potential of using thermochemolytic GC-EI/MS of PDIM biomarkers for diagnosis of tuberculosis in sputum has been established; however, further refinements in sample processing are required to enhance the sensitivity and robustness of the test.
authors.affiliation: Department of Pathogen Molecular Biology, London School of Hygiene & Tropical Medicine, London, United Kingdom.
authors.forename: Denise M
authors.initials: DM
authors.lastname: O'Sullivan
authors.forename: Simona C
authors.initials: SC
authors.lastname: Nicoara
authors.forename: Reggie
authors.initials: R
authors.lastname: Mutetwa
authors.forename: Stanley
authors.initials: S
authors.lastname: Mungofa
authors.forename: Oona Y-C
authors.initials: OY
authors.lastname: Lee
authors.forename: David E
authors.initials: DE
authors.lastname: Minnikin
authors.forename: Max W
authors.initials: MW
authors.lastname: Bardwell
authors.forename: Elizabeth L
authors.initials: EL
authors.lastname: Corbett
authors.forename: Ruth
authors.initials: R
authors.lastname: McNerney
authors.forename: Geraint H
authors.initials: GH
authors.lastname: Morgan
mesh_terms: D046508:Culture Techniques; D005227:Fatty Acids / Q000032:analysis* / Q000378:metabolism; D008401:Gas Chromatography-Mass Spectrometry / Q000379:methods* / Q000592:standards; D006801:Humans; D008055:Lipids / Q000032:analysis; D009169:Mycobacterium tuberculosis / Q000166:cytology / Q000254:growth & development / Q000302:isolation & purification* / Q000378:metabolism*; D012015:Reference Standards; D013183:Sputum / Q000382:microbiology*; D013696:Temperature
chemical_list: D005227:Fatty Acids; D008055:Lipids; C032992:mycocerosic acid; C008901:phthiocerol dimycocerosate