title: Interactions between relay helix and Src homology 1 (SH1) domain helix drive the converter domain rotation during the recovery stroke of myosin II.
abstract: Myosin motor protein exists in two alternative conformations, prerecovery state M* and postrecovery state M**, on adenosine triphosphate binding. The details of the M*-to-M** transition, known as the recovery stroke to reflect its role as the functional opposite of the force-generating power stroke, remain elusive. The defining feature of the postrecovery state is a kink in the relay helix, a key part of the protein involved in force generation. In this article, we determine the interactions that are responsible for the appearance of the kink. We design a series of computational models that contain three other segments, relay loop, converter domain, and Src homology 1 (SH1) domain helix, with which relay helix interacts and determine their structure in accurate replica exchange molecular dynamics simulations in explicit solvent. By conducting an exhaustive combinatorial search among different models, we find that: (1) the converter domain must be attached to the relay helix during the transition, so it does not interfere with other parts of the protein and (2) the structure of the relay helix is controlled by SH1 helix. The kink is strongly coupled to the position of SH1 helix. It arises as a result of direct interactions between SH1 and the relay helix and leads to a rotation of the C-terminal part of the relay helix, which is subsequently transmitted to the converter domain.
authors.affiliation: Department of Physics and Optical Science, University of North Carolina Charlotte, Charlotte, NC 28262, USA. abaumket@uncc.edu
authors.forename: Andrij
authors.initials: A
authors.lastname: Baumketner
mesh_terms: D000595:Amino Acid Sequence; D003461:Crystallography; D056004:Molecular Dynamics Simulation; D008969:Molecular Sequence Data; D024462:Myosin Type II / Q000737:chemistry* / Q000378:metabolism; D017433:Protein Structure, Secondary; D018909:src Homology Domains
chemical_list: D024462:Myosin Type II