title: JETTA: junction and exon toolkits for transcriptome analysis.
abstract: CONCLUSIONS
  High-throughput genome-wide studies of alternatively spliced mRNA transcripts have become increasingly important in clinical research. Consequently, easy-to-use software tools are required to process data from these studies, for example, using exon and junction arrays. Here, we introduce JETTA, an integrated software package for the calculation of gene expression indices as well as the identification and visualization of alternative splicing events. We demonstrate the software using data of human liver and muscle samples hybridized on an exon-junction array.
  
  
  BACKGROUND
  JETTA and its demonstrations are freely available at http://igenomed.stanford.edu/~junhee/JETTA/index.html
authors.affiliation: Stanford Genome Technology Center, 855 California Street, Palo Alto, CA 94304, USA.
authors.forename: Junhee
authors.initials: J
authors.lastname: Seok
authors.forename: Weihong
authors.initials: W
authors.lastname: Xu
authors.forename: Hong
authors.initials: H
authors.lastname: Gao
authors.forename: Ronald W
authors.initials: RW
authors.lastname: Davis
authors.forename: Wenzhong
authors.initials: W
authors.lastname: Xiao
mesh_terms: D017398:Alternative Splicing; D005091:Exons; D020869:Gene Expression Profiling; D055106:Genome-Wide Association Study; D006801:Humans; D008099:Liver / Q000378:metabolism; D009132:Muscles / Q000378:metabolism; D020411:Oligonucleotide Array Sequence Analysis; D022821:RNA Splice Sites; D012984:Software
chemical_list: D022821:RNA Splice Sites