title: Assessment of gastroenteric viruses frequency in a children's day care center in Rio De Janeiro, Brazil: a fifteen year study (1994-2008).
abstract: This 15-year study aimed to determine the role of the main viruses responsible for acute infantile gastroenteritis cases in a day care center in the city of Rio de Janeiro, Brazil. From 1994 to 2008, 539 fecal samples were obtained from 23 outbreaks as well as sporadic cases that occurred in this period. The detection of Rotavirus group A (RVA), norovirus (NoV) and astrovirus (AstV) was investigated both by classical and molecular methods of viral detection. RVA was detected by enzymatic immune assay and/or polyacrylamide gel electrophoresis and genotyped by using semi-nested multiplex PCR. NoV and AstV were subsequently tested by real time PCR in all RVA-negative samples and genotyped throughout genome sequencing. Three protocols for molecular characterization of NoV nucleotide sequencing were performed with the partial nucleotide sequencing of genomic regions known as region B (polymerase gen), C and D (capsid gen).Viruses were identified in 47.7% (257/539) of the cases, and the detection rates of RVA, NoV and AstV in16.1% (87/539), 33.4% (151/452), and 6.3% (19/301), respectively. Most gastroenteritis cases were reported in autumn and winter, although NoV presented a broader monthly distribution. Viruses' detection rates were significantly higher among children aged less than 24 months old, although NoV cases were detected in all age groups. RVA genotypes as G1P[8], G9P[8], G2P[4], G3P[8] and G1+G3P[8] and RVA was no longer detected after 2005. NoV characterization revealed genotypes variability circulating in the period as GI.2, GI.3, GI.8 GII.2, GII.3, GII.4, GII.4 variants 2001 and 2006b, GII.6, GII.7, GII.12 and GII.17. AstV genotypes 1, 2, 4 and 5 were also characterized. Those data demonstrate the impact of NoV infection in cases of infantile gastroenteritis, surpassing RVA infection responsible for high morbidity rate in children under five years old.
authors.affiliation: Laboratório de Virologia Comparada e Ambiental, Instituto Oswaldo Cruz/Fiocruz, Rio de Janeiro, Rio de Janeiro, Brazil. mosrocha@ioc.fiocruz.br
authors.forename: Mônica Simões Rocha
authors.initials: MS
authors.lastname: Ferreira
authors.forename: Maria da Penha Trindade Pinheiro
authors.initials: Mda P
authors.lastname: Xavier
authors.forename: Anna Carolina De Castro
authors.initials: AC
authors.lastname: Tinga
authors.forename: Tatiana Lundgren
authors.initials: TL
authors.lastname: Rose
authors.forename: Tulio Machado
authors.initials: TM
authors.lastname: Fumian
authors.forename: Alexandre Madi
authors.initials: AM
authors.lastname: Fialho
authors.forename: Rosane Maria
authors.initials: RM
authors.lastname: de Assis
authors.forename: Filipe Aníbal
authors.initials: FA
authors.lastname: Carvalho Costa
authors.forename: Solange Artimos
authors.initials: SA
authors.lastname: de Oliveira
authors.forename: José Paulo Gagliardi
authors.initials: JP
authors.lastname: Leite
authors.forename: Marize Pereira
authors.initials: MP
authors.lastname: Miagostovich
mesh_terms: D000328:Adult; D019350:Astroviridae Infections / Q000175:diagnosis* / Q000235:genetics / Q000821:virology; D001938:Brazil / Q000453:epidemiology; D017250:Caliciviridae Infections / Q000175:diagnosis* / Q000235:genetics / Q000821:virology; D002656:Child Day Care Centers; D002675:Child, Preschool; D005243:Feces / Q000821:virology; D005500:Follow-Up Studies; D005759:Gastroenteritis / Q000453:epidemiology* / Q000235:genetics / Q000821:virology; D006801:Humans; D015994:Incidence; D007223:Infant; D001257:Mamastrovirus / Q000235:genetics / Q000302:isolation & purification; D017720:Molecular Epidemiology; D029322:Norovirus / Q000235:genetics / Q000302:isolation & purification; D012367:RNA, Viral / Q000235:genetics*; D060888:Real-Time Polymerase Chain Reaction; D012401:Rotavirus / Q000235:genetics / Q000302:isolation & purification; D012400:Rotavirus Infections / Q000175:diagnosis* / Q000235:genetics / Q000821:virology
chemical_list: D012367:RNA, Viral