title: Ancient DNA assessment of tiger salamander population in Yellowstone National Park.
abstract: Recent data indicates that blotched tiger salamanders (Ambystoma tigrinum melanostictum) in northern regions of Yellowstone National Park are declining due to climate-related habitat changes. In this study, we used ancient and modern mitochondrial haplotype diversity to model the effective size of this amphibian population through recent geological time and to assess past responses to climatic changes in the region. Using subfossils collected from a cave in northern Yellowstone, we analyzed >700 base pairs of mitochondrial sequence from 16 samples ranging in age from 100 to 3300 years old and found that all shared an identical haplotype. Although mitochondrial diversity was extremely low within the living population, we still were able to detect geographic subdivision within the local area. Using serial coalescent modelling with Bayesian priors from both modern and ancient genetic data we simulated a range of probable population sizes and mutation rates through time. Our simulations suggest that regional mitochondrial diversity has remained relatively constant even through climatic fluctuations of recent millennia.
authors.affiliation: Department of Biology, Stanford University, Stanford, California, United States of America. skmcmena@u.washington.edu
authors.forename: Sarah K
authors.initials: SK
authors.lastname: McMenamin
authors.forename: Elizabeth A
authors.initials: EA
authors.lastname: Hadly
mesh_terms: D000557:Ambystoma / Q000235:genetics*; D000704:Analysis of Variance; D000818:Animals; D001483:Base Sequence; D001499:Bayes Theorem; D003198:Computer Simulation; D017931:DNA Primers / Q000235:genetics; D004272:DNA, Mitochondrial / Q000235:genetics*; D019143:Evolution, Molecular; D005580:Fossils; D014644:Genetic Variation; D006239:Haplotypes / Q000235:genetics; D008957:Models, Genetic; D008969:Molecular Sequence Data; D059645:Mutation Rate; D011156:Population Density; D017422:Sequence Analysis, DNA; D014959:Wyoming
chemical_list: D017931:DNA Primers; D004272:DNA, Mitochondrial