title: Metabonomic study of host-phage interaction by nuclear magnetic resonance- and statistical total correlation spectroscopy-based analysis.
abstract: We present a method for the qualitative and quantitative study of transient metabolic flux of phage infection at the molecular level. The method is based on statistical total correlation spectroscopy (STOCSY) and partial least squares discriminant analysis (PLS-DA) applied to nuclear magnetic resonance (NMR) metabonomic data sets. An algorithm for this type of study is developed and demonstrated. The method has been implemented on (1)H NMR data sets of growth media in planktonic cultures of  Pseudomonas aeruginosa  infected with bacteriophage pf1. Transient metabolic flux of various important metabolites, identified by STOCSY and PLS-DA analysis applied to the NMR data set, are estimated at various stages of growth. The opportunistic and nosocomial pathogen  P. aeruginosa  is one of the best-studied model organism for bacterial biofilms. Complete information regarding metabolic connectivity of this system is not possible by conventional spectroscopic approach. Our study presents temporal comparative (1)H NMR metabonomic analyses of  filamentous phage pf1 infection in planktonic cultures of  P. aeruginosa  K strain (PAK). We exemplify here the potential of STOCSY and PLS-DA tools to gain mechanistic insight into subtle changes and to determine the transient flux associated with metabolites following metabolic perturbations resulting from phage infection. Our study has given new avenues in correlating existing postgenomic data with current metabonomic results in  P. aeruginosa  biofilms research.
authors.affiliation: Centre of Biomedical Magnetic Resonance, SGPGIMS Campus, Raebareli Road, Lucknow 226014, India.
authors.forename: Kanchan
authors.initials: K
authors.lastname: Sonkar
authors.forename: Rudra N
authors.initials: RN
authors.lastname: Purusottam
authors.forename: Neeraj
authors.initials: N
authors.lastname: Sinha
mesh_terms: D000465:Algorithms; D025561:Bacteriophage Pf1 / Q000378:metabolism / Q000502:physiology*; D054884:Host-Pathogen Interactions; D055442:Metabolome; D055432:Metabolomics / Q000379:methods*; D019906:Nuclear Magnetic Resonance, Biomolecular / Q000379:methods*; D011550:Pseudomonas aeruginosa / Q000378:metabolism / Q000821:virology*