title: Transferability of STS markers in studying genetic relationships of marvel grass (Dichanthium annulatum).
abstract: Transferability of sequence-tagged-sites (STS) markers was assessed for genetic relationships study among accessions of marvel grass (Dichanthium annulatum Forsk.). In total, 17 STS primers of Stylosanthes origin were tested for their reactivity with thirty accessions of Dichanthium annulatum. Of these, 14 (82.4%) reacted and a total 106 (84 polymorphic) bands were scored. The number of bands generated by individual primer pairs ranged from 4 to 11 with an average of 7.57 bands, whereas polymorphic bands ranged from 4 to 9 with an average of 6.0 bands accounts to an average polymorphism of 80.1%. Polymorphic information content (PIC) ranged from 0.222 to 0.499 and marker index (MI) from 1.33 to 4.49. Utilizing Dice coefficient of genetic similarity dendrogram was generated through un-weighted pairgroup method with arithmetic mean (UPGMA) algorithm. Further, clustering through sequential agglomerative hierarchical and nested (SAHN) method resulted three main clusters constituted all accessions except IGBANG-D-2. Though there was intermixing of few accessions of one agro-climatic region to another, largely groupings of accessions were with their regions of collections. Bootstrap analysis at 1000 scale also showed large number of nodes (11 to 17) having strong clustering (> 50). Thus, results demonstrate the utility of STS markers of Stylosanthes in studying the genetic relationships among accessions of Dichanthium.
authors.affiliation: Crop Improvement Division, Indian Grassland and Fodder Research Institute, Jhansi, 284 003, India.
authors.forename: Raghvendra
authors.initials: R
authors.lastname: Saxena
authors.forename: Amaresh
authors.initials: A
authors.lastname: Chandra
mesh_terms: D018744:DNA, Plant / Q000235:genetics*; D018506:Gene Expression Regulation, Plant / Q000502:physiology*; D005819:Genetic Markers; D010802:Phylogeny; D010940:Plant Proteins / Q000235:genetics / Q000378:metabolism; D006109:Poaceae / Q000235:genetics* / Q000378:metabolism*; D011110:Polymorphism, Genetic; D016324:Sequence Tagged Sites
chemical_list: D018744:DNA, Plant; D005819:Genetic Markers; D010940:Plant Proteins