title: Conformational landscape of N-glycosylated peptides detecting autoantibodies in multiple sclerosis, revealed by Hamiltonian replica exchange.
abstract: Synthetic N-glycosylated CSF114(Glc) and related peptides were proved to be able to recognize specific and high-affinity autoantibodies circulating in blood of relapsing-remitting multiple sclerosis (MS) patients and correlating with disease activity. The effect of these peptides has been linked to the β-turn structure around the minimal epitope Asn(Glc). In this work we performed Hamiltonian replica exchange molecular dynamics simulations on the central heptapeptide fragment of a CSF114(Glc)-derived peptide in water and in a water/hexafluoroacetone mixture, confirming a significant incidence of β-turn structures in both solvents. The structural similarity of the glycosylated and unglycosylated forms in all environments proves that the conformation of the heptapeptide is only marginally affected by the presence of the sugar. Moreover, the presence of a significant amount of bioactive hairpin-like conformations in the water environment suggests a possible use not only in the diagnosis but also in the treatment of MS.
authors.affiliation: Department of Chemistry, University of Florence, Sesto Fiorentino, Italy 50019.
authors.forename: Carlo
authors.initials: C
authors.lastname: Guardiani
authors.forename: Giorgio F
authors.initials: GF
authors.lastname: Signorini
authors.forename: Roberto
authors.initials: R
authors.lastname: Livi
authors.forename: Anna Maria
authors.initials: AM
authors.lastname: Papini
authors.forename: Piero
authors.initials: P
authors.lastname: Procacci
mesh_terms: D000096:Acetone / Q000031:analogs & derivatives / Q000737:chemistry; D000595:Amino Acid Sequence; D001323:Autoantibodies / Q000097:blood* / Q000276:immunology*; D005466:Fluorocarbons / Q000737:chemistry; D006020:Glycopeptides / Q000737:chemistry* / Q000378:metabolism*; D006031:Glycosylation; D056004:Molecular Dynamics Simulation; D009103:Multiple Sclerosis / Q000097:blood*; D009842:Oligopeptides / Q000737:chemistry / Q000276:immunology; D010446:Peptide Fragments / Q000737:chemistry* / Q000276:immunology; D011487:Protein Conformation; D017510:Protein Folding; D012997:Solvents / Q000737:chemistry; D014867:Water / Q000737:chemistry; D006845:Hydrocarbons, Fluorinated
chemical_list: D000096:Acetone; D001323:Autoantibodies; D005466:Fluorocarbons; D006020:Glycopeptides; D009842:Oligopeptides; D010446:Peptide Fragments; D012997:Solvents; D014867:Water; C017366:hexafluoroacetone; D006845:Hydrocarbons, Fluorinated