title: Variation of serine-aspartate repeats in membrane proteins possibly contributes to staphylococcal microevolution.
abstract: Tandem repeats (either as microsatellites or minisatellites) in eukaryotic and prokaryotic organisms are mutation-prone DNA. While minisatellites in prokaryotic genomes are underrepresented, the cell surface adhesins of bacteria often contain the minisatellite SD repeats, encoding the amino acid pair of serine-asparatate, especially in Staphylococcal strains. However, their relationship to biological functions is still elusive. In this study, effort was made to uncover the copy number variations of SD repeats by bioinformatic analysis and to detect changes in SD repeats during a plasmid-based assay, as a first step to understand its biological functions. The SD repeats were found to be mainly present in the cell surface proteins. The SD repeats were genetically unstable and polymorphic in terms of copy numbers and sequence compositions. Unlike SNPs, the change of its copy number was reversible, without frame shifting. More significantly, a rearrangement hot spot, the ATTC/AGRT site, was found to be mainly responsible for the instability and reversibility of SD repeats. These characteristics of SD repeats may facilitate bacteria to respond to environmental changes, with low cost, low risk and high efficiency.
authors.affiliation: Department of Animal Science, McGill University, Montreal, Quebec, Canada.
authors.forename: Jing
authors.initials: J
authors.lastname: Cheng
authors.forename: Huping
authors.initials: H
authors.lastname: Xue
authors.forename: Xin
authors.initials: X
authors.lastname: Zhao
mesh_terms: D001224:Aspartic Acid / Q000235:genetics*; D001483:Base Sequence; D003030:Coagulase / Q000235:genetics*; D056915:DNA Copy Number Variations; D019143:Evolution, Molecular; D008565:Membrane Proteins / Q000235:genetics*; D018598:Minisatellite Repeats / Q000235:genetics; D008969:Molecular Sequence Data; D020449:Repetitive Sequences, Amino Acid / Q000235:genetics*; D015183:Restriction Mapping; D012694:Serine / Q000235:genetics*; D013211:Staphylococcus aureus / Q000235:genetics*
chemical_list: C515944:ClfA protein, Staphylococcus aureus; D003030:Coagulase; D008565:Membrane Proteins; D001224:Aspartic Acid; D012694:Serine