title: Conservation of tubulin-binding sequences in TRPV1 throughout evolution.
abstract: BACKGROUND
  Transient Receptor Potential Vanilloid sub type 1 (TRPV1), commonly known as capsaicin receptor can detect multiple stimuli ranging from noxious compounds, low pH, temperature as well as electromagnetic wave at different ranges. In addition, this receptor is involved in multiple physiological and sensory processes. Therefore, functions of TRPV1 have direct influences on adaptation and further evolution also. Availability of various eukaryotic genomic sequences in public domain facilitates us in studying the molecular evolution of TRPV1 protein and the respective conservation of certain domains, motifs and interacting regions that are functionally important.
  
  
  RESULTS
  Using statistical and bioinformatics tools, our analysis reveals that TRPV1 has evolved about ∼420 million years ago (MYA). Our analysis reveals that specific regions, domains and motifs of TRPV1 has gone through different selection pressure and thus have different levels of conservation. We found that among all, TRP box is the most conserved and thus have functional significance. Our results also indicate that the tubulin binding sequences (TBS) have evolutionary significance as these stretch sequences are more conserved than many other essential regions of TRPV1. The overall distribution of positively charged residues within the TBS motifs is conserved throughout evolution. In silico analysis reveals that the TBS-1 and TBS-2 of TRPV1 can form helical structures and may play important role in TRPV1 function.
  
  
  CONCLUSIONS
  Our analysis identifies the regions of TRPV1, which are important for structure-function relationship. This analysis indicates that tubulin binding sequence-1 (TBS-1) near the TRP-box forms a potential helix and the tubulin interactions with TRPV1 via TBS-1 have evolutionary significance. This interaction may be required for the proper channel function and regulation and may also have significance in the context of Taxol®-induced neuropathy.
authors.affiliation: National Institute of Science Education and Research, Bhubaneswar, Orissa, India.
authors.forename: Puspendu
authors.initials: P
authors.lastname: Sardar
authors.forename: Abhishek
authors.initials: A
authors.lastname: Kumar
authors.forename: Anita
authors.initials: A
authors.lastname: Bhandari
authors.forename: Chandan
authors.initials: C
authors.lastname: Goswami
mesh_terms: D000818:Animals; D045304:Cytochromes c / Q000235:genetics / Q000378:metabolism; D019143:Evolution, Molecular; D006657:Histones / Q000235:genetics / Q000378:metabolism; D010802:Phylogeny; D011485:Protein Binding; D017434:Protein Structure, Tertiary; D012641:Selection, Genetic; D012911:Snakes / Q000235:genetics / Q000378:metabolism; D050916:TRPV Cation Channels / Q000235:genetics* / Q000378:metabolism*; D014404:Tubulin / Q000235:genetics* / Q000378:metabolism*
chemical_list: D006657:Histones; D050916:TRPV Cation Channels; C494484:TRPV1 receptor; D014404:Tubulin; D045304:Cytochromes c