title: Circulating and synovial antibody profiling of juvenile arthritis patients by nucleic acid programmable protein arrays.
abstract: BACKGROUND
  Juvenile idiopathic arthritis (JIA) is a heterogeneous disease characterized by chronic joint inflammation of unknown cause in children. JIA is an autoimmune disease and small numbers of autoantibodies have been reported in JIA patients. The identification of antibody markers could improve the existing clinical management of patients.
  
  
  METHODS
  A pilot study was performed on the application of a high-throughput platform, the nucleic acid programmable protein array (NAPPA), to assess the levels of antibodies present in the systemic circulation and synovial joint of a small cohort of juvenile arthritis patients. Plasma and synovial fluid from 10 JIA patients was screened for antibodies against 768 proteins on NAPPAs.
  
  
  RESULTS
  Quantitative reproducibility of NAPPAs was demonstrated with > 0.95 intra-array and inter-array correlations. A strong correlation was also observed for the levels of antibodies between plasma and synovial fluid across the study cohort (r = 0.96). Differences in the levels of 18 antibodies were revealed between sample types across all patients. Patients were segregated into two clinical subtypes with distinct antibody signatures by unsupervised hierarchical cluster analysis.
  
  
  CONCLUSIONS
  The NAPPAs provide a high-throughput quantitatively reproducible platform to screen for disease-specific autoantibodies at the proteome level on a microscope slide. The strong correlation between the circulating antibody levels and those of the inflamed joint represents a novel finding and provides confidence to use plasma for discovery of autoantibodies in JIA, thus circumventing the challenges associated with joint aspiration. We expect that autoantibody profiling of JIA patients on NAPPAs could yield antibody markers that can act as criteria to stratify patients, predict outcomes and understand disease etiology at the molecular level.
authors.affiliation: Arthritis Research Group, Centre for Infection and Immunity, Health Science Building, Queen's University of Belfast, 97 Lisburn Road, Belfast BT9 7BL, UK. david.gibson@ucdenver.edu
authors.forename: David S
authors.initials: DS
authors.lastname: Gibson
authors.forename: Ji
authors.initials: J
authors.lastname: Qiu
authors.forename: Eliseo A
authors.initials: EA
authors.lastname: Mendoza
authors.forename: Kristi
authors.initials: K
authors.lastname: Barker
authors.forename: Madeleine E
authors.initials: ME
authors.lastname: Rooney
authors.forename: Joshua
authors.initials: J
authors.lastname: LaBaer
mesh_terms: D000293:Adolescent; D001171:Arthritis, Juvenile / Q000235:genetics / Q000378:metabolism*; D001323:Autoantibodies / Q000097:blood / Q000235:genetics / Q000502:physiology*; D015415:Biomarkers / Q000097:blood / Q000378:metabolism; D002648:Child; D002675:Child, Preschool; D015331:Cohort Studies; D005260:Female; D020869:Gene Expression Profiling / Q000379:methods; D006801:Humans; D008297:Male; D009696:Nucleic Acids / Q000097:blood / Q000235:genetics / Q000502:physiology*; D010865:Pilot Projects; D040081:Protein Array Analysis / Q000379:methods; D013582:Synovial Fluid / Q000276:immunology / Q000378:metabolism*
chemical_list: D001323:Autoantibodies; D015415:Biomarkers; D009696:Nucleic Acids