title: Molecular diversity of methanogens in fecal samples from captive Sumatran orangutans (Pongo abelii).
abstract: Methane emissions have been previously detected from orangutans, but characterization of the diversity of methanogens in this species has yet to be completed. This preliminary study identified methanogen producing microorganims, also called methanogens, present in the feces from a colony of captive Sumatran orangutans at the Perth Zoo. All animals were housed in the same enclosure and were fed primarily a frugivorous diet. Methanogens were detected using a 16S rRNA gene clone library. A total of 207 clones were examined, revealing 37 different methanogen 16S rRNA sequences, or phylotypes. Of these, 31 phylotypes represented by 170 clones had 96.4-100% sequence identity to Methanosphaera stadtmanae, four phylotypes (32 clones) had 95.1-100% sequence identity to Methanobrevibacter smithii, while two phylotypes (five clones) had 95.9-97.7% sequence identity to Methanobacterium beijingense. Overall, five possible new species were identified from the clone library. This represents the first report of Msp. stadtmanae, a methanol utilizer, as the most predominant methanogen in the gastrointestinal tract of animals. This is likely due to the increased availability of methanol from the highly frugivorous diet of the orangutans. Further studies are warranted to properly assess the effects of frugivorous diets on the methanogen population.
authors.affiliation: Department of Animal Science, University of Vermont, Burlington, 05405, USA.
authors.forename: Hannah V
authors.initials: HV
authors.lastname: Facey
authors.forename: Korinne S
authors.initials: KS
authors.lastname: Northwood
authors.forename: André-Denis G
authors.initials: AD
authors.lastname: Wright
mesh_terms: D000818:Animals; D000836:Animals, Zoo / Q000382:microbiology*; D005243:Feces / Q000382:microbiology*; D005260:Female; D015723:Gene Library; D008297:Male; D017013:Methanobacteriaceae / Q000235:genetics / Q000302:isolation & purification*; D017014:Methanobacterium / Q000235:genetics / Q000302:isolation & purification*; D041581:Methanobrevibacter / Q000235:genetics / Q000302:isolation & purification*; D008969:Molecular Sequence Data; D016133:Polymerase Chain Reaction; D057080:Pongo abelii / Q000382:microbiology*; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D014904:Western Australia
chemical_list: D012336:RNA, Ribosomal, 16S