title: Oxygen radical-mediated oxidation reactions of an alanine peptide motif - density functional theory and transition state theory study.
abstract: BACKGROUND
  Oxygen-base (O-base) oxidation in protein backbone is important in the protein backbone fragmentation due to the attack from reactive oxygen species (ROS). In this study, an alanine peptide was used model system to investigate this O-base oxidation by employing density functional theory (DFT) calculations combining with continuum solvent model. Detailed reaction steps were analyzed along with their reaction rate constants.
  
  
  RESULTS
  Most of the O-base oxidation reactions for this alanine peptide are exothermic except for the bond-breakage of the Cα-N bond to form hydroperoxy alanine radical. Among the reactions investigated in this study, the activated energy of OH α-H abstraction is the lowest one, while the generation of alkylperoxy peptide radical must overcome the highest energy barrier. The aqueous situation facilitates the oxidation reactions to generate hydroxyl alanine peptide derivatives except for the fragmentations of alkoxyl alanine peptide radical. The Cα-Cβ bond of the alkoxyl alanine peptide radical is more labile than the peptide bond.
  
  
  CONCLUSIONS
  the rate-determining step of oxidation in protein backbone is the generation of hydroperoxy peptide radical via the reaction of alkylperoxy peptide radical with HO2. The stabilities of alkylperoxy peptide radical and complex of alkylperoxy peptide radical with HO2 are crucial in this O-base oxidation reaction.
authors.affiliation: Department of Chemistry, National Chung Hsing University, Taichung, Taiwan 402, R,O,C. hflu@chem.sinica.edu.tw.
authors.forename: Hsing-Yu
authors.initials: HY
authors.lastname: Chen
authors.forename: Soonmin
authors.initials: S
authors.lastname: Jang
authors.forename: Tzyy-Rong
authors.initials: TR
authors.lastname: Jinn
authors.forename: Jia-Yaw
authors.initials: JY
authors.lastname: Chang
authors.forename: Hsiu-Feng
authors.initials: HF
authors.lastname: Lu
authors.forename: Feng-Yin
authors.initials: FY
authors.lastname: Li