title: Isolation of cDNA from Jacaratia mexicana encoding a mexicain-like cysteine protease gene.
abstract: Cysteine proteases (CPs) from the C1 family, which are similar to papain, can be found in animals and plants, as well as some viruses and prokaryotes. These enzymes have diverse physiological functions and are thus very attractive for science and industry. Jacaratia mexicana, a member of the Caricaceae plant family, contains several CPs, the principal being mexicain, found to favorably compete against papain for many industrial applications due to its high stability and specific activity. In this study, leaves of J. mexicana were used to isolate a CP-coding gene, similar to those that code for mexicain and chymomexicain. By using rapid amplification of cDNA ends (RACE) as well as oligonucleotide design from papain-like conserved amino acids (aa), a sequence of 1404 bp consisting of a 5' terminal untranslated region (UTR) of 153 bp, a 3' terminal UTR of 131 bp, with a polyadenylation (poly(A)) signal sequence and a poly(A) tail, and an open reading frame (ORF) of 1046 bp, was obtained by overlapping three partial sequences. Two full-length cDNA sequences that encode for mexicain-like proteases were cloned from mRNA (JmCP4 and JmCP5). JmCP4 is predicted to have an ORF of 1044 bp, which codifies for polypeptides that have a 26 aa signal peptide region, a 108 aa propeptide region and a mature enzyme of 214 aa. A 969 bp fragment (JmCP5) encodes for a partial sequence of a CP gene, without the signal peptide region but with a full-length propeptide region. The sequence analysis showed that this protease presented a high similarity to other plant CPs from J. mexicana, Vasconcellea cundinamarcensis, Vasconcellea stipulata, and Carica papaya, among others, mainly at the conserved catalytic site. Obtaining the sequence of this CP gene from J. mexicana provides an alternative for production in a standard system and could be an initial step towards the commercialization of this enzyme.
authors.affiliation: Unidad Profesional Interdisciplinaria de Biotecnología, Instituto Politécnico Nacional, México DF, Mexico.
authors.forename: Erick M
authors.initials: EM
authors.lastname: Ramos-Martínez
authors.forename: Alejandra C
authors.initials: AC
authors.lastname: Herrera-Ramírez
authors.forename: Jesús Agustín
authors.initials: JA
authors.lastname: Badillo-Corona
authors.forename: Claudio
authors.initials: C
authors.lastname: Garibay-Orijel
authors.forename: Nuria
authors.initials: N
authors.lastname: González-Rábade
authors.forename: María Del Carmen
authors.initials: Mdel C
authors.lastname: Oliver-Salvador
mesh_terms: D020816:Amino Acid Motifs; D000595:Amino Acid Sequence; D001483:Base Sequence; D031241:Caricaceae / Q000201:enzymology / Q000235:genetics*; D020134:Catalytic Domain; D057056:Cysteine Proteases / Q000096:biosynthesis / Q000737:chemistry / Q000235:genetics*; D018076:DNA, Complementary / Q000096:biosynthesis; D004795:Enzyme Stability; D007527:Isoenzymes / Q000096:biosynthesis / Q000737:chemistry / Q000235:genetics; D008958:Models, Molecular; D008969:Molecular Sequence Data; D018515:Plant Leaves / Q000235:genetics; D010940:Plant Proteins / Q000096:biosynthesis / Q000737:chemistry / Q000235:genetics*; D011498:Protein Precursors / Q000737:chemistry / Q000235:genetics*; D012333:RNA, Messenger / Q000235:genetics / Q000302:isolation & purification; D018749:RNA, Plant / Q000235:genetics / Q000302:isolation & purification*; D011994:Recombinant Proteins / Q000096:biosynthesis / Q000737:chemistry / Q000235:genetics; D020133:Reverse Transcriptase Polymerase Chain Reaction; D017422:Sequence Analysis, DNA; D017386:Sequence Homology, Amino Acid; D040681:Structural Homology, Protein
chemical_list: D018076:DNA, Complementary; D007527:Isoenzymes; D010940:Plant Proteins; D011498:Protein Precursors; D012333:RNA, Messenger; D018749:RNA, Plant; D011994:Recombinant Proteins; D057056:Cysteine Proteases