title: An adaptive stepsize method for the chemical Langevin equation.
abstract: Mathematical and computational modeling are key tools in analyzing important biological processes in cells and living organisms. In particular, stochastic models are essential to accurately describe the cellular dynamics, when the assumption of the thermodynamic limit can no longer be applied. However, stochastic models are computationally much more challenging than the traditional deterministic models. Moreover, many biochemical systems arising in applications have multiple time-scales, which lead to mathematical stiffness. In this paper we investigate the numerical solution of a stochastic continuous model of well-stirred biochemical systems, the chemical Langevin equation. The chemical Langevin equation is a stochastic differential equation with multiplicative, non-commutative noise. We propose an adaptive stepsize algorithm for approximating the solution of models of biochemical systems in the Langevin regime, with small noise, based on estimates of the local error. The underlying numerical method is the Milstein scheme. The proposed adaptive method is tested on several examples arising in applications and it is shown to have improved efficiency and accuracy compared to the existing fixed stepsize schemes.
authors.affiliation: Department of Mathematics, Ryerson University, Toronto, Ontario M5B 2K3, Canada. silvana@ryerson.ca
authors.forename: Silvana
authors.initials: S
authors.lastname: Ilie
authors.forename: Alexandra
authors.initials: A
authors.lastname: Teslya
mesh_terms: D000465:Algorithms; D008956:Models, Chemical; D017711:Nonlinear Dynamics; D013269:Stochastic Processes; D013997:Time Factors