title: Transcriptome and comparative gene expression analysis of Sogatella furcifera (Horváth) in response to southern rice black-streaked dwarf virus.
abstract: BACKGROUND
  The white backed planthopper (WBPH), Sogatella furcifera (Horváth), causes great damage to many crops by direct feeding or transmitting plant viruses. Southern rice black-streaked dwarf virus (SRBSDV), transmitted by WBPH, has become a great threat to rice production in East Asia.
  
  
  RESULTS
  By de novo transcriptome assembling and massive parallel pyrosequencing, we constructed two transcriptomes of WBPH and profiled the alternation of gene expression in response to SRBSDV infection in transcriptional level. Over 25 million reads of high-quality DNA sequences and 81388 different unigenes were generated using Illumina technology from both viruliferous and non-viruliferous WBPH. WBPH has a very similar gene ontological distribution to other two closely related rice planthoppers, Nilaparvata lugens and Laodelphax striatellus. 7291 microsatellite loci were also predicted which could be useful for further evolutionary analysis. Furthermore, comparative analysis of the two transcriptomes generated from viruliferous and non-viruliferous WBPH provided a list of candidate transcripts that potentially were elicited as a response to viral infection. Pathway analyses of a subset of these transcripts indicated that SRBSDV infection may perturb primary metabolism and the ubiquitin-proteasome pathways. In addition, 5.5% (181 out of 3315) of the genes in cell cytoskeleton organization pathway showed obvious changes. Our data also demonstrated that SRBSDV infection activated the immunity regulatory systems of WBPH, such as RNA interference, autophagy and antimicrobial peptide production.
  
  
  CONCLUSIONS
  We employed massively parallel pyrosequencing to collect ESTs from viruliferous and non-viruliferous samples of WBPH. 81388 different unigenes have been obtained. We for the first time described the direct effects of a Reoviridae family plant virus on global gene expression profiles of its insect vector using high-throughput sequencing. Our study will provide a road map for future investigations of the fascinating interactions between Reoviridae viruses and their insect vectors, and provide new strategies for crop protection.
authors.affiliation: State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, People's Republic of China.
authors.forename: Yi
authors.initials: Y
authors.lastname: Xu
authors.forename: Wenwu
authors.initials: W
authors.lastname: Zhou
authors.forename: Yijun
authors.initials: Y
authors.lastname: Zhou
authors.forename: Jianxiang
authors.initials: J
authors.lastname: Wu
authors.forename: Xueping
authors.initials: X
authors.lastname: Zhou
mesh_terms: D000818:Animals; D002453:Cell Cycle / Q000235:genetics; D003599:Cytoskeleton / Q000235:genetics; D015536:Down-Regulation / Q000235:genetics; D020869:Gene Expression Profiling; D005819:Genetic Markers / Q000235:genetics; D006430:Hemiptera / Q000166:cytology / Q000235:genetics* / Q000276:immunology / Q000821:virology*; D056724:Immunity, Humoral / Q000235:genetics; D007303:Insect Vectors / Q000166:cytology / Q000235:genetics / Q000276:immunology / Q000821:virology; D058977:Molecular Sequence Annotation; D012275:Oryza / Q000821:virology*; D010942:Plant Viruses / Q000502:physiology*; D046988:Proteasome Endopeptidase Complex / Q000378:metabolism; D034622:RNA Interference; D012087:Reoviridae / Q000502:physiology*; D012088:Reoviridae Infections / Q000235:genetics / Q000276:immunology / Q000378:metabolism; D017422:Sequence Analysis, DNA; D025801:Ubiquitin / Q000378:metabolism
chemical_list: D005819:Genetic Markers; D025801:Ubiquitin; D046988:Proteasome Endopeptidase Complex