title: Combined fluorescence spectroscopy and molecular modeling studies on the interaction between harmalol and human serum albumin.
abstract: The interaction between harmalol and human serum albumin (HSA) has been studied by fluorescence spectroscopy and molecular modeling methods. The intrinsic fluorescence of HSA was quenched by harmalol, which was rationalized in terms of the static quenching mechanism. The binding parameters, quenching constants and conformation changes were determined by fluorescence quenching method. The thermodynamic parameters, calculated from the temperature dependence of binding constants (i.e., ΔH°=-62.7 kJ mol⁻¹ and ΔS°=-119.3J mol⁻¹ K⁻¹), indicated the major role of van der Waals force and hydrogen bonding in binding process. Site marker competitive experiments revealed that harmalol binds to both the IIA and IIIA sub-domains of HSA with a slight preference toward sub-domain IIA. Finally, the binding of harmalol to HSA was modeled by molecular docking and molecular dynamic simulation methods. Excellent agreement was found between the experimental and theoretical results with respect to the mechanism of binding and binding constants. Molecular dynamic simulation revealed that HSA does not have a significant conformational change when it binds with harmalol.
authors.affiliation: Department of Chemistry, Shiraz University, Shiraz, Iran. hemmatb@sums.ac.ir
authors.forename: Bahram
authors.initials: B
authors.lastname: Hemmateenejad
authors.forename: Mojtaba
authors.initials: M
authors.lastname: Shamsipur
authors.forename: Fayezeh
authors.initials: F
authors.lastname: Samari
authors.forename: Taghi
authors.initials: T
authors.lastname: Khayamian
authors.forename: Malihe
authors.initials: M
authors.lastname: Ebrahimi
authors.forename: Zahra
authors.initials: Z
authors.lastname: Rezaei
mesh_terms: D006246:Harmaline / Q000031:analogs & derivatives* / Q000737:chemistry; D006801:Humans; D008958:Models, Molecular; D012709:Serum Albumin / Q000737:chemistry*; D013050:Spectrometry, Fluorescence / Q000379:methods*; D017550:Spectroscopy, Fourier Transform Infrared; D013816:Thermodynamics
chemical_list: D012709:Serum Albumin; C007904:harmalol; D006246:Harmaline