title: Community structure of methanogenic archaea and methane production associated with compost-treated tropical rice-field soil.
abstract: The diversity and density of methanogenic archaea and methane production were investigated ex situ at different growth stages of rice plant cultivated in compost-treated tropical rice fields. The qPCR analysis revealed variation in methanogens population from 3.40 × 10(6)  to 1.11 × 10(7)  copies g(-1)  dws, in the year 2009 and 4.37 × 10(6)  to 1.36 × 10(7)  copies g(-1)  dws in the year 2010. Apart from methanogens, a large number of bacterial (9.60 × 10(9) -1.44 × 10(10)  copies g(-1)  dws) and archaeal (7.13 × 10(7) -3.02 × 10(8)  copies g(-1)  dws) communities were also associated with methanogenesis. Methanogen population size varied in the order: flowering > ripening > tillering > postharvest > preplantation stage. The RFLP-based 16S rRNA gene-targeted phylogenetic analysis showed that clones were closely related to diverse group of methanogens comprising members of Methanomicrobiaceae, Methanosarcinaceae, Methanosaetaceae and RC I. Laboratory incubation studies revealed higher amount of cumulative CH(4)  at the flowering stage. The integration of methanogenic community structure and CH(4)  production potential of soil resulted in a better understanding of the dynamics of CH(4)  production in organically treated rice-field soil. The hypothesis that the stages of plant development influence the methanogenic community structure leading to temporal variation in the CH(4)  production has been successfully tested.
authors.affiliation: Department of Botany, Faculty of Science, Banaras Hindu University, Varanasi, India.
authors.forename: Alpana
authors.initials: A
authors.lastname: Singh
authors.forename: Ram S
authors.initials: RS
authors.lastname: Singh
authors.forename: Siddh N
authors.initials: SN
authors.lastname: Upadhyay
authors.forename: Chaitanya G
authors.initials: CG
authors.lastname: Joshi
authors.forename: Ajay K
authors.initials: AK
authors.lastname: Tripathi
authors.forename: Suresh K
authors.initials: SK
authors.lastname: Dubey
mesh_terms: D000383:Agriculture / Q000379:methods; D019641:DNA, Archaeal / Q000235:genetics; D008697:Methane / Q000096:biosynthesis*; D019638:Methanomicrobiaceae / Q000145:classification* / Q000235:genetics; D017019:Methanosarcinaceae / Q000145:classification* / Q000235:genetics; D019640:Methanosarcinales / Q000145:classification* / Q000235:genetics; D012275:Oryza / Q000254:growth & development / Q000382:microbiology*; D010802:Phylogeny; D012150:Polymorphism, Restriction Fragment Length; D011156:Population Density; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D012987:Soil / Q000737:chemistry; D012988:Soil Microbiology
chemical_list: D019641:DNA, Archaeal; D012336:RNA, Ribosomal, 16S; D012987:Soil; D008697:Methane