title: EXP-PAC: providing comparative analysis and storage of next generation gene expression data.
abstract: Microarrays and more recently RNA sequencing has led to an increase in available gene expression data. How to manage and store this data is becoming a key issue. In response we have developed EXP-PAC, a web based software package for storage, management and analysis of gene expression and sequence data. Unique to this package is SQL based querying of gene expression data sets, distributed normalization of raw gene expression data and analysis of gene expression data across experiments and species. This package has been populated with lactation data in the international milk genomic consortium web portal (http://milkgenomics.org/). Source code is also available which can be hosted on a Windows, Linux or Mac APACHE server connected to a private or public network (http://mamsap.it.deakin.edu.au/~pcc/Release/EXP_PAC.html).
authors.affiliation: School of Information Technology, Faculty of Science and Technology, Deakin University, Geelong VIC 3127, Australia. pcc@deakin.edu.au
authors.forename: Philip C
authors.initials: PC
authors.lastname: Church
authors.forename: Andrzej
authors.initials: A
authors.lastname: Goscinski
authors.forename: Christophe
authors.initials: C
authors.lastname: Lefèvre
mesh_terms: D020869:Gene Expression Profiling; D006801:Humans; D016247:Information Storage and Retrieval / Q000379:methods*; D058977:Molecular Sequence Annotation / Q000379:methods*; D020411:Oligonucleotide Array Sequence Analysis; D017423:Sequence Analysis, RNA / Q000379:methods*; D012984:Software