title: miRSeqNovel: an R based workflow for analyzing miRNA sequencing data.
abstract: We present miRSeqNovel, an R based workflow for miRNA sequencing data analysis. miRSeqNovel can process both colorspace (SOLiD) and basespace (Illumina/Solexa) data by different mapping algorithms. It finds differentially expressed miRNAs and gives conservative prediction of novel miRNA candidates with customized parameters. miRSeqNovel is freely available at http://sourceforge.net/projects/mirseq/files.
authors.affiliation: DNA Sequencing and Genomics Laboratory, Institute of Biotechnology, University of Helsinki, Helsinki, Finland. kui.qian@helsinki.fi
authors.forename: Kui
authors.initials: K
authors.lastname: Qian
authors.forename: Eeva
authors.initials: E
authors.lastname: Auvinen
authors.forename: Dario
authors.initials: D
authors.lastname: Greco
authors.forename: Petri
authors.initials: P
authors.lastname: Auvinen
mesh_terms: D000465:Algorithms; D017360:Arabidopsis / Q000235:genetics; D006801:Humans; D035683:MicroRNAs / Q000235:genetics*; D017423:Sequence Analysis, RNA; D012984:Software
chemical_list: D035683:MicroRNAs