DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways.
MicroRNAs (miRNAs) are key regulators of diverse biological processes and their functional analysis has been deemed central in many research pipelines. The new version of DIANA-miRPath web server was redesigned from the ground-up. The user of DNA Intelligent Analysis (DIANA) DIANA-miRPath v2.0 can now utilize miRNA targets predicted with high accuracy based on DIANA-microT-CDS and/or experimentally verified targets from TarBase v6; combine results with merging and meta-analysis algorithms; perform hierarchical clustering of miRNAs and pathways based on their interaction levels; as well as elaborate sophisticated visualizations, such as dendrograms or miRNA versus pathway heat maps, from an intuitive and easy to use web interface. New modules enable DIANA-miRPath server to provide information regarding pathogenic single nucleotide polymorphisms (SNPs) in miRNA target sites (SNPs module) or to annotate all the predicted and experimentally validated miRNA targets in a selected molecular pathway (Reverse Search module). DIANA-miRPath v2.0 is an efficient and yet easy to use tool that can be incorporated successfully into miRNA-related analysis pipelines. It provides for the first time a series of highly specific tools for miRNA-targeted pathway analysis via a web interface and can be accessed at http://www.microrna.gr/miRPathv2.
DIANA-Lab, Institute of Molecular Oncology, Biomedical Sciences Research Center 'Alexander Fleming', 16672 Vari, Greece.
Ioannis S
IS
Vlachos
Nikos
N
Kostoulas
Thanasis
T
Vergoulis
Georgios
G
Georgakilas
Martin
M
Reczko
Manolis
M
Maragkakis
Maria D
MD
Paraskevopoulou
Kostantinos
K
Prionidis
Theodore
T
Dalamagas
Artemis G
AG
Hatzigeorgiou
D000465:Algorithms; D016000:Cluster Analysis; D003196:Computer Graphics; D030541:Databases, Genetic; D015870:Gene Expression; D005786:Gene Expression Regulation; D006801:Humans; D020407:Internet; D035683:MicroRNAs / Q000378:metabolism*; D020641:Polymorphism, Single Nucleotide; D012984:Software
D035683:MicroRNAs