Structural and functional dissection of aminocoumarin antibiotic biosynthesis: a review.
Aminocoumarin antibiotics are natural products of soil-dwelling bacteria called Streptomycetes. They are potent inhibitors of DNA gyrase, an essential bacterial enzyme and validated drug target, and thus have attracted considerable interest as potential templates for drug development. To date, aminocoumarins have not seen widespread clinical application on account of their poor pharmacological properties. Through studying the structures and mechanisms of enzymes from their biosynthetic pathways we will be better informed to redesign these compounds through rational pathway engineering. Novobiocin, the simplest compound, requires at least seventeen gene products to convert primary metabolites into the mature antibiotic. We have solved the crystal structures of four diverse biosynthetic enzymes from the novobiocin pathway, and used these as three-dimensional frameworks for the interpretation of functional and mechanistic data, and to speculate about how they might have evolved. The structure determinations have ranged from the routine to the challenging, necessitating a variety of different approaches.
Department of Biological Chemistry, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK. david.lawson@jic.ac.uk
David M
DM
Lawson
Clare E M
CE
Stevenson
D000900:Anti-Bacterial Agents / Q000096:biosynthesis* / Q000737:chemistry; D001426:Bacterial Proteins / Q000737:chemistry; D002238:Carbohydrate Epimerases / Q000737:chemistry; D004122:Dimethylallyltranstransferase / Q000737:chemistry; D019159:Nonheme Iron Proteins / Q000737:chemistry; D009675:Novobiocin / Q000096:biosynthesis* / Q000737:chemistry; D011497:Protein O-Methyltransferase / Q000737:chemistry; D017433:Protein Structure, Secondary; D013302:Streptomyces / Q000737:chemistry* / Q000201:enzymology; D013329:Structure-Activity Relationship; D013379:Substrate Specificity
D000900:Anti-Bacterial Agents; D001426:Bacterial Proteins; D019159:Nonheme Iron Proteins; D009675:Novobiocin; D011497:Protein O-Methyltransferase; C524783:NovP protein, Streptomyces; D004122:Dimethylallyltranstransferase; D002238:Carbohydrate Epimerases; C483836:NovW Carbohydrate Epimerase