Sampling in landscape genomics.
Landscape genomics, based on the sampling of individuals genotyped for a large number of markers, may lead to the identification of regions of the genome correlated to selection pressures caused by the environment. In this chapter, we discuss sampling strategies to be used in a landscape genomics approach. We suggest that designs based on model-based stratification using the climatic and/or biological spaces are in general more efficient than designs based on the geographic space. More work is needed to identify designs that allow disentangling environmental selection pressures versus other processes such as range expansions or hierarchical population structure.
Laboratoire Population Environnement Développement, UMR 151 UP/IRD, Université Aix-Marseille, Marseille, France. stephanie.manel@univ-provence.fr
Stéphanie
S
Manel
Cécile H
CH
Albert
Nigel G
NG
Yoccoz
D000222:Adaptation, Physiological; D000818:Animals; D004777:Environment; D014644:Genetic Variation; D005828:Genetics, Population / Q000379:methods* / Q000706:statistics & numerical data; D016678:Genome; D023281:Genomics / Q000379:methods* / Q000706:statistics & numerical data; D005838:Genotype; D010944:Plants; D012641:Selection, Genetic