8-17 DNAzyme modified with purine analogs in its catalytic core: the conservation of the five-membered moieties of purine residues.
8-17 DNAzyme is characterized by its recurrence in different in vitro selections and versatile cleavage sites, leading to extensive studies on its structural properties and applications. We evaluated the purine residues (A6, G7, G11, A12, G14, and A15) in the catalytic core of 8-17 DNAzyme of their five-membered ring moiety with purine analogs 1-5 to have an insight into the conservation of the residues at the level of functional groups. The 7-nitrogen atom in the AGC loop was demonstrated to be strictly conserved for the cleavage reaction. But such modifications exerted favorable effect at G11 of the base-pair stem and A12 in the single-strand loop, directing toward more efficient DNAzymes. Even the most conserved G14 could tolerate such modifications. These results demonstrated that chemical modification on the functional groups is a feasible approach to gain an insight into the structural requirement in the catalytic reaction of DNAzymes. It also provided modification sites for introduction of signaling molecules used for mechanistic and folding studies of 8-17 DNAzyme.
College of Life Science, Guizhou University, Guiyang 550025, China.
Wei
W
Rong
Liang
L
Xu
Yang
Y
Liu
Jianping
J
Yu
Ying
Y
Zhou
Keliang
K
Liu
Junlin
J
He
D020134:Catalytic Domain; D021881:DNA, Catalytic / Q000737:chemistry* / Q000378:metabolism; D007700:Kinetics; D009690:Nucleic Acid Conformation; D009838:Oligodeoxyribonucleotides / Q000737:chemistry; D011687:Purines / Q000737:chemistry*
D021881:DNA, Catalytic; D009838:Oligodeoxyribonucleotides; D011687:Purines; C030985:purine