Circular dichroism spectral data and metadata in the Protein Circular Dichroism Data Bank (PCDDB): a tutorial guide to accession and deposition.
The Protein Circular Dichroism Data Bank (PCDDB) is a web-based resource containing circular dichroism (CD) and synchrotron radiation circular dichroism spectral and associated metadata located at http://pcddb.cryst.bbk.ac.uk. This resource provides a freely available, user-friendly means of accessing validated CD spectra and their associated experimental details and metadata, thereby enabling broad usage of this material and new developments across the structural biology, chemistry, and bioinformatics communities. The resource also enables researchers utilizing CD as an experimental technique to have a means of storing their data at a secure site from which it is easily retrievable, thereby making their results publicly accessible, a current requirement of many grant-funding agencies world-wide, as well as meeting the data-sharing requirements for journal publications. This tutorial provides extensive information on searching, accessing, and downloading procedures for those who wish to utilize the data available in the data bank, and detailed information on deposition procedures for creating and validating entries, including comprehensive explanations of their contents and formats, for those who wish to include their data in the data bank.
School of Biological and Chemical Sciences, Queen Mary University of London, London, United Kingdom. r.w.janes@qmul.ac.uk
Robert W
RW
Janes
A J
AJ
Miles
B
B
Woollett
L
L
Whitmore
D
D
Klose
B A
BA
Wallace
D002942:Circular Dichroism; D003626:Data Display; D057225:Data Mining / Q000379:methods*; D030562:Databases, Protein; D020407:Internet; D057766:Policy; D015203:Reproducibility of Results; D017356:Synchrotrons