What can we learn about lyssavirus genomes using 454 sequencing?
The main task of the individual project number four"Whole genome sequencing, virus-host adaptation, and molecular epidemiological analyses of lyssaviruses "within the network" Lyssaviruses--a potential re-emerging public health threat" is to provide high quality complete genome sequences from lyssaviruses. These sequences are analysed in-depth with regard to the diversity of the viral populations as to both quasi-species and so-called defective interfering RNAs. Moreover, the sequence data will facilitate further epidemiological analyses, will provide insight into the evolution of lyssaviruses and will be the basis for the design of novel nucleic acid based diagnostics. The first results presented here indicate that not only high quality full-length lyssavirus genome sequences can be generated, but indeed efficient analysis of the viral population gets feasible.
Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Greifswald - Insel Riems, Germany. dirk.hoeper@fli.bund.de
Dirk
D
Höper
Stefan
S
Finke
Conrad M
CM
Freuling
Bernd
B
Hoffmann
Martin
M
Beer
D014644:Genetic Variation; D016679:Genome, Viral / Q000235:genetics*; D018114:Lyssavirus / Q000235:genetics*; D008969:Molecular Sequence Data; D017421:Sequence Analysis; D012984:Software