On the calculation of ³Jαβ-coupling constants for side chains in proteins.
Structural knowledge about proteins is mainly derived from values of observables, measurable in NMR spectroscopic or X-ray diffraction experiments, i.e. absorbed or scattered intensities, through theoretically derived relationships between structural quantities such as atom positions or torsional angles on the one hand and observable quantities such as squared structure factor amplitudes, NOE intensities or (3) J-coupling constants on the other. The standardly used relation connecting (3) J-couplings to torsional angles is the Karplus relation, which is used in protein structure refinement as well as in the evaluation of simulated properties of proteins. The accuracy of the simple and generalised Karplus relations is investigated using side-chain structural and (3) J (αβ)-coupling data for three different proteins, Plastocyanin, Lysozyme, and FKBP, for which such data are available. The results show that the widely used Karplus relations are only a rough estimate for the relation between (3) J (αβ)-couplings and the corresponding χ(1)-angle in proteins.
Laboratory of Physical Chemistry, ETH, Swiss Federal Institute of Technology, 8093 Zurich, Switzerland.
Denise
D
Steiner
Jane R
JR
Allison
Andreas P
AP
Eichenberger
Wilfred F
WF
van Gunsteren
D008958:Models, Molecular; D009113:Muramidase / Q000737:chemistry; D019906:Nuclear Magnetic Resonance, Biomolecular / Q000379:methods*; D010970:Plastocyanin / Q000737:chemistry; D011487:Protein Conformation; D011506:Proteins / Q000737:chemistry*; D022021:Tacrolimus Binding Proteins / Q000737:chemistry
D011506:Proteins; D010970:Plastocyanin; D009113:Muramidase; D022021:Tacrolimus Binding Proteins