title: BioImageXD: an open, general-purpose and high-throughput image-processing platform.
abstract: BioImageXD puts open-source computer science tools for three-dimensional visualization and analysis into the hands of all researchers, through a user-friendly graphical interface tuned to the needs of biologists. BioImageXD has no restrictive licenses or undisclosed algorithms and enables publication of precise, reproducible and modifiable workflows. It allows simple construction of processing pipelines and should enable biologists to perform challenging analyses of complex processes. We demonstrate its performance in a study of integrin clustering in response to selected inhibitors.
authors: Department of Biochemistry and Food Chemistry, University of Turku, Turku, Finland. pasi.kankaanpaa@utu.fi
authors: Pasi
authors: P
authors: Kankaanpää
authors: Lassi
authors: L
authors: Paavolainen
authors: Silja
authors: S
authors: Tiitta
authors: Mikko
authors: M
authors: Karjalainen
authors: Joacim
authors: J
authors: Päivärinne
authors: Jonna
authors: J
authors: Nieminen
authors: Varpu
authors: V
authors: Marjomäki
authors: Jyrki
authors: J
authors: Heino
authors: Daniel J
authors: DJ
authors: White
mesh_terms: D000465:Algorithms; D019295:Computational Biology / Q000295:instrumentation / Q000379:methods*; D057166:High-Throughput Screening Assays / Q000295:instrumentation / Q000379:methods*; D021621:Imaging, Three-Dimensional / Q000295:instrumentation / Q000379:methods*; D012984:Software; D014584:User-Computer Interface