title: Fiji: an open-source platform for biological-image analysis.
abstract: Fiji is a distribution of the popular open-source software ImageJ focused on biological-image analysis. Fiji uses modern software engineering practices to combine powerful software libraries with a broad range of scripting languages to enable rapid prototyping of image-processing algorithms. Fiji facilitates the transformation of new algorithms into ImageJ plugins that can be shared with end users through an integrated update system. We propose Fiji as a platform for productive collaboration between computer science and biology research communities.
authors: Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany.
authors: Johannes
authors: J
authors: Schindelin
authors: Ignacio
authors: I
authors: Arganda-Carreras
authors: Erwin
authors: E
authors: Frise
authors: Verena
authors: V
authors: Kaynig
authors: Mark
authors: M
authors: Longair
authors: Tobias
authors: T
authors: Pietzsch
authors: Stephan
authors: S
authors: Preibisch
authors: Curtis
authors: C
authors: Rueden
authors: Stephan
authors: S
authors: Saalfeld
authors: Benjamin
authors: B
authors: Schmid
authors: Jean-Yves
authors: JY
authors: Tinevez
authors: Daniel James
authors: DJ
authors: White
authors: Volker
authors: V
authors: Hartenstein
authors: Kevin
authors: K
authors: Eliceiri
authors: Pavel
authors: P
authors: Tomancak
authors: Albert
authors: A
authors: Cardona
mesh_terms: D000465:Algorithms; D000818:Animals; D001921:Brain / Q000648:ultrastructure; D019295:Computational Biology / Q000379:methods*; D004331:Drosophila melanogaster / Q000648:ultrastructure; D007089:Image Enhancement / Q000379:methods; D007091:Image Processing, Computer-Assisted / Q000379:methods*; D021621:Imaging, Three-Dimensional / Q000379:methods; D033181:Information Dissemination; D012984:Software; D012985:Software Design