title: Molecular cloning and expression analysis of GABA(A) receptor-associated protein (GABARAP) from small abalone, Haliotis diversicolor.
abstract: GABA(A) receptor-associated protein (GABARAP), a multifunctional protein participating in autophagy process, is evolutionarily conserved and involves in innate immunity in eukaryotic cells, but currently there is no research on the relationship between GABARAP and innate immunity in mollusc. In the present study, the GABARAP full-length cDNA and its genomic DNA were firstly cloned from small abalone (Haliotis diversicolor), which was named as saGABARAP. Its full-length cDNA is 963 bp with a 354 bp open reading frame encoding a protein of 117 aa, a 276 bp 5'-UTR, and a 333 bp 3'-UTR including a poly(A) tail, two typical polyadenylation signals (AATAA) and two RNA instability motifs (ATTTA). The deduced protein has an estimated molecular weight of 13.9 kDa and a predicted PI of 8.73. Its genomic DNA comprises 4352 bp, containing three exons and two introns. Quantitative real-time PCR analysis revealed that saGABARAP was constitutively expressed in all examined tissues, with the highest expression level in hepatopancreas, and was upregulated in hepatopancreas and hemocytes after bacterial challenge. In addition, saGABARAP was ubiquitously expressed at all examined embryonic and larval development stages. These results suggested that saGABARAP could respond to bacteria challenge and may play a vital role in the adult innate immune system against pathogens and the development process of abalone embryo and larvae.
authors: Department of Biochemistry and Biotechnology, School of Life Sciences, Xiamen University, Xiamen 361005, China.
authors: Rongyao
authors: R
authors: Bai
authors: Weiwei
authors: W
authors: You
authors: Jun
authors: J
authors: Chen
authors: Heqing
authors: H
authors: Huang
authors: Caihuan
authors: C
authors: Ke
mesh_terms: D000595:Amino Acid Sequence; D000818:Animals; D001483:Base Sequence; D003001:Cloning, Molecular; D018076:DNA, Complementary / Q000235:genetics / Q000378:metabolism; D050485:GABA Plasma Membrane Transport Proteins / Q000235:genetics* / Q000276:immunology / Q000378:metabolism*; D049851:Gastropoda / Q000235:genetics* / Q000276:immunology / Q000378:metabolism* / Q000382:microbiology; D008969:Molecular Sequence Data; D010802:Phylogeny; D060888:Real-Time Polymerase Chain Reaction / Q000662:veterinary; D018079:Receptors, GABA / Q000276:immunology / Q000378:metabolism; D016415:Sequence Alignment / Q000662:veterinary; D044149:Vibrio alginolyticus / Q000276:immunology
chemical_list: D018076:DNA, Complementary; D050485:GABA Plasma Membrane Transport Proteins; D018079:Receptors, GABA