title: Genes for the major structural components of Thermotogales species' togas revealed by proteomic and evolutionary analyses of OmpA and OmpB homologs.
abstract: The unifying structural characteristic of members of the bacterial order Thermotogales is their toga, an unusual cell envelope that includes a loose-fitting sheath around each cell. Only two toga-associated structural proteins have been purified and characterized in Thermotoga maritima: the anchor protein OmpA1 (or Ompα) and the porin OmpB (or Ompβ). The gene encoding OmpA1 (ompA1) was cloned and sequenced and later assigned to TM0477 in the genome sequence, but because no peptide sequence was available for OmpB, its gene (ompB) was not annotated. We identified six porin candidates in the genome sequence of T. maritima. Of these candidates, only one, encoded by TM0476, has all the characteristics reported for OmpB and characteristics expected of a porin including predominant β-sheet structure, a carboxy terminus porin anchoring motif, and a porin-specific amino acid composition. We highly enriched a toga fraction of cells for OmpB by sucrose gradient centrifugation and hydroxyapatite chromatography and analyzed it by LC/MS/MS. We found that the only porin candidate that it contained was the TM0476 product. This cell fraction also had β-sheet character as determined by circular dichroism, consistent with its enrichment for OmpB. We conclude that TM0476 encodes OmpB. A phylogenetic analysis of OmpB found orthologs encoded in syntenic locations in the genomes of all but two Thermotogales species. Those without orthologs have putative isofunctional genes in their place. Phylogenetic analyses of OmpA1 revealed that each species of the Thermotogales has one or two OmpA homologs. T. maritima has two OmpA homologs, encoded by ompA1 (TM0477) and ompA2 (TM1729), both of which were found in the toga protein-enriched cell extracts. These annotations of the genes encoding toga structural proteins will guide future examinations of the structure and function of this unusual lineage-defining cell sheath.
authors: Department of Molecular and Cell Biology, University of Connecticut, Storrs, Connecticut, United States of America.
authors: Amanda K
authors: AK
authors: Petrus
authors: Kristen S
authors: KS
authors: Swithers
authors: Chaman
authors: C
authors: Ranjit
authors: Si
authors: S
authors: Wu
authors: Heather M
authors: HM
authors: Brewer
authors: J Peter
authors: JP
authors: Gogarten
authors: Ljiljana
authors: L
authors: Pasa-Tolic
authors: Kenneth M
authors: KM
authors: Noll
mesh_terms: D000595:Amino Acid Sequence; D001425:Bacterial Outer Membrane Proteins / Q000235:genetics* / Q000302:isolation & purification; D001483:Base Sequence; D002462:Cell Membrane / Q000235:genetics*; D002499:Centrifugation, Density Gradient; D002845:Chromatography; D002942:Circular Dichroism; D017886:Durapatite; D019143:Evolution, Molecular; D005798:Genes, Bacterial / Q000235:genetics*; D016013:Likelihood Functions; D008969:Molecular Sequence Data; D010802:Phylogeny; D018272:Porins / Q000737:chemistry / Q000235:genetics; D055503:Protein Multimerization; D040901:Proteomics / Q000379:methods*; D012689:Sequence Homology, Nucleic Acid; D013045:Species Specificity; D026801:Synteny / Q000235:genetics; D020124:Thermotoga maritima / Q000166:cytology / Q000235:genetics*
chemical_list: D001425:Bacterial Outer Membrane Proteins; D018272:Porins; C078167:OMPA outer membrane proteins; D017886:Durapatite