title: SpliceSeq: a resource for analysis and visualization of RNA-Seq data on alternative splicing and its functional impacts.
abstract: CONCLUSIONS
  SpliceSeq is a resource for RNA-Seq data that provides a clear view of alternative splicing and identifies potential functional changes that result from splice variation. It displays intuitive visualizations and prioritized lists of results that highlight splicing events and their biological consequences. SpliceSeq unambiguously aligns reads to gene splice graphs, facilitating accurate analysis of large, complex transcript variants that cannot be adequately represented in other formats.
  
  
  METHODS
  SpliceSeq is freely available at http://bioinformatics.mdanderson.org/main/SpliceSeq:Overview. The application is a Java program that can be launched via a browser or installed locally. Local installation requires MySQL and Bowtie.
  
  
  BACKGROUND
  mryan@insilico.us.com
  
  
  BACKGROUND
  Supplementary data are available at Bioinformatics online.
authors: In Silico Solutions, Fairfax, VA, USA. mryan@insilico.us.com
authors: Michael C
authors: MC
authors: Ryan
authors: James
authors: J
authors: Cleland
authors: RyangGuk
authors: R
authors: Kim
authors: Wing Chung
authors: WC
authors: Wong
authors: John N
authors: JN
authors: Weinstein
mesh_terms: D000465:Algorithms; D017398:Alternative Splicing; D003196:Computer Graphics; D017423:Sequence Analysis, RNA / Q000379:methods*; D012984:Software