title: Calculating pKa values for substituted phenols and hydration energies for other compounds with the first-order Fuzzy-Border continuum solvation model.
abstract: We have computed pK(a) values for 11 substituted phenol compounds using the continuum Fuzzy-Border (FB) solvation model. Hydration energies for 40 other compounds, including alkanes, alkenes, alkynes, ketones, amines, alcohols, ethers, aromatics, amides, heterocycles, thiols, sulfides, and acids have been calculated. The overall average unsigned error in the calculated acidity constant values was equal to 0.41 pH units and the average error in the solvation energies was 0.076 kcal/mol. We have also reproduced pK(a) values of propanoic and butanoic acids within about 0.1 pH units from the experimental values by fitting the solvation parameters for carboxylate ion carbon and oxygen atoms. The FB model combines two distinguishing features. First, it limits the amount of noise which is common in numerical treatment of continuum solvation models by using fixed-position grid points. Second, it uses either second- or first-order approximation for the solvent polarization, depending on a particular implementation. These approximations are similar to those used for solute and explicit solvent fast polarization treatment which we developed previously. This article describes results of using the first-order technique. This approximation places the presented methodology between the Generalized Born and Poisson-Boltzmann continuum solvation models with respect to their accuracy of reproducing the many-body effects in modeling a continuum solvent.
authors: Department of Chemistry and Biochemistry, Worcester Polytechnic Institute, Worcester, MA 01609, USA.
authors: Ity
authors: I
authors: Sharma
authors: George A
authors: GA
authors: Kaminski
mesh_terms: D000143:Acids / Q000737:chemistry; D000438:Alcohols / Q000737:chemistry; D000473:Alkanes / Q000737:chemistry; D000475:Alkenes / Q000737:chemistry; D000480:Alkynes / Q000737:chemistry; D000577:Amides / Q000737:chemistry; D000588:Amines / Q000737:chemistry; D004987:Ethers / Q000737:chemistry; D006571:Heterocyclic Compounds / Q000737:chemistry; D006863:Hydrogen-Ion Concentration; D007659:Ketones / Q000737:chemistry; D008956:Models, Chemical; D056004:Molecular Dynamics Simulation; D010636:Phenols / Q000737:chemistry*; D012995:Solubility; D012997:Solvents / Q000737:chemistry*; D055672:Static Electricity; D013438:Sulfhydryl Compounds / Q000737:chemistry; D013440:Sulfides / Q000737:chemistry; D013816:Thermodynamics; D014867:Water / Q000737:chemistry*
chemical_list: D000143:Acids; D000438:Alcohols; D000473:Alkanes; D000475:Alkenes; D000480:Alkynes; D000577:Amides; D000588:Amines; D004987:Ethers; D006571:Heterocyclic Compounds; D007659:Ketones; D010636:Phenols; D012997:Solvents; D013438:Sulfhydryl Compounds; D013440:Sulfides; D014867:Water