title: Shift in the equilibrium between on and off states of the allosteric switch in Ras-GppNHp affected by small molecules and bulk solvent composition.
abstract: Ras GTPase cycles between its active GTP-bound form promoted by GEFs and its inactive GDP-bound form promoted by GAPs to affect the control of various cellular functions. It is becoming increasingly apparent that subtle regulation of the GTP-bound active state may occur through promotion of substates mediated by an allosteric switch mechanism that induces a disorder to order transition in switch II upon ligand binding at an allosteric site. We show with high-resolution structures that calcium acetate and either dithioerythritol (DTE) or dithiothreitol (DTT) soaked into H-Ras-GppNHp crystals in the presence of a moderate amount of poly(ethylene glycol) (PEG) can selectively shift the equilibrium to the "on" state, where the active site appears to be poised for catalysis (calcium acetate), or to what we call the "ordered off" state, which is associated with an anticatalytic conformation (DTE or DTT). We also show that the equilibrium is reversible in our crystals and dependent on the nature of the small molecule present. Calcium acetate binding in the allosteric site stabilizes the conformation observed in the H-Ras-GppNHp/NOR1A complex, and PEG, DTE, and DTT stabilize the anticatalytic conformation observed in the complex between the Ras homologue Ran and Importin-β. The small molecules are therefore selecting biologically relevant conformations in the crystal that are sampled by the disordered switch II in the uncomplexed GTP-bound form of H-Ras. In the presence of a large amount of PEG, the ordered off conformation predominates, whereas in solution, in the absence of PEG, switch regions appear to remain disordered in what we call the off state, unable to bind DTE.
authors: Department of Molecular and Structural Biochemistry, North Carolina State University, Raleigh, NC 27695, USA.
authors: Genevieve
authors: G
authors: Holzapfel
authors: Greg
authors: G
authors: Buhrman
authors: Carla
authors: C
authors: Mattos
mesh_terms: D000085:Acetates / Q000378:metabolism / Q000494:pharmacology; D000494:Allosteric Regulation / Q000187:drug effects; D000495:Allosteric Site / Q000187:drug effects; D017610:Calcium Compounds / Q000378:metabolism / Q000494:pharmacology; D020134:Catalytic Domain; D004226:Dithioerythritol / Q000378:metabolism / Q000494:pharmacology; D004229:Dithiothreitol / Q000378:metabolism / Q000494:pharmacology; D004795:Enzyme Stability / Q000187:drug effects; D006160:Guanosine Triphosphate / Q000378:metabolism; D006165:Guanylyl Imidodiphosphate / Q000737:chemistry*; D006868:Hydrolysis; D007527:Isoenzymes / Q000737:chemistry / Q000378:metabolism; D008958:Models, Molecular; D011092:Polyethylene Glycols / Q000494:pharmacology; D017433:Protein Structure, Secondary; D054852:Small Molecule Libraries / Q000378:metabolism / Q000494:pharmacology*; D012996:Solutions; D012997:Solvents / Q000737:chemistry* / Q000494:pharmacology*; D018631:ras Proteins / Q000737:chemistry* / Q000378:metabolism
chemical_list: D000085:Acetates; D017610:Calcium Compounds; D007527:Isoenzymes; D054852:Small Molecule Libraries; D012996:Solutions; D012997:Solvents; D006165:Guanylyl Imidodiphosphate; D011092:Polyethylene Glycols; D004226:Dithioerythritol; D006160:Guanosine Triphosphate; D018631:ras Proteins; D004229:Dithiothreitol; C120662:calcium acetate