title: A MATLAB toolbox for structural kinetic modeling.
abstract: CONCLUSIONS
  Structural kinetic modeling (SKM) enables the analysis of dynamical properties of metabolic networks solely based on topological information and experimental data. Current SKM-based experiments are hampered by the time-intensive process of assigning model parameters and choosing appropriate sampling intervals for Monte-Carlo experiments. We introduce a toolbox for the automatic and efficient construction and evaluation of structural kinetic models (SK models). Quantitative and qualitative analyses of network stability properties are performed in an automated manner. We illustrate the model building and analysis process in detailed example scripts that provide toolbox implementations of previously published literature models.
  
  
  BACKGROUND
  The source code is freely available for download at http://bioinformatics.uni-potsdam.de/projects/skm.
  
  
  BACKGROUND
  girbig@mpimp-golm.mpg.de.
authors: Bioinformatics Group, Max-Planck Institute for Molecular Plant Physiology, 14476 Potsdam, Germany. girbig@mpimp-golm.mpg.de
authors: Dorothee
authors: D
authors: Girbig
authors: Joachim
authors: J
authors: Selbig
authors: Sergio
authors: S
authors: Grimbs
mesh_terms: D007700:Kinetics; D053858:Metabolic Networks and Pathways; D008954:Models, Biological; D009010:Monte Carlo Method; D012984:Software