title: Identification of blood culture isolates directly from positive blood cultures by use of matrix-assisted laser desorption ionization-time of flight mass spectrometry and a commercial extraction system: analysis of performance, cost, and turnaround time.
abstract: Matrix-assisted laser desorption ionization-time of flight (MALDI-TOF) mass spectrometry represents a revolution in the rapid identification of bacterial and fungal pathogens in the clinical microbiology laboratory. Recently, MALDI-TOF has been applied directly to positive blood culture bottles for the rapid identification of pathogens, leading to reductions in turnaround time and potentially beneficial patient impacts. The development of a commercially available extraction kit (Bruker Sepsityper) for use with the Bruker MALDI BioTyper has facilitated the processing required for identification of pathogens directly from positive from blood cultures. We report the results of an evaluation of the accuracy, cost, and turnaround time of this method for 61 positive monomicrobial and 2 polymicrobial cultures representing 26 species. The Bruker MALDI BioTyper with the Sepsityper gave a valid (score, >1.7) identification for 85.2% of positive blood cultures with no misidentifications. The mean reduction in turnaround time to identification was 34.3 h (P < 0.0001) in the ideal situation where MALDI-TOF was used for all blood cultures and 26.5 h in a more practical setting where conventional identification or identification from subcultures was required for isolates that could not be directly identified by MALDI-TOF. Implementation of a MALDI-TOF-based identification system for direct identification of pathogens from blood cultures is expected to be associated with a marginal increase in operating costs for most laboratories. However, the use of MALDI-TOF for direct identification is accurate and should result in reduced turnaround time to identification.
authors.affiliation: Department of Medical Microbiology and Infectious Diseases, University of Manitoba. Winnipeg, Manitoba, Canada. plagacewiens@dsmanitoba.ca
authors.forename: Philippe R S
authors.initials: PR
authors.lastname: Lagacé-Wiens
authors.forename: Heather J
authors.initials: HJ
authors.lastname: Adam
authors.forename: James A
authors.initials: JA
authors.lastname: Karlowsky
authors.forename: Kimberly A
authors.initials: KA
authors.lastname: Nichol
authors.forename: Paulette F
authors.initials: PF
authors.lastname: Pang
authors.forename: Jodi
authors.initials: J
authors.lastname: Guenther
authors.forename: Amanda A
authors.initials: AA
authors.lastname: Webb
authors.forename: Crystal
authors.initials: C
authors.lastname: Miller
authors.forename: Michelle J
authors.initials: MJ
authors.lastname: Alfa
mesh_terms: D016470:Bacteremia / Q000175:diagnosis* / Q000382:microbiology; D001769:Blood / Q000382:microbiology*; D003365:Costs and Cost Analysis; D016469:Fungemia / Q000175:diagnosis* / Q000382:microbiology; D006801:Humans; D008828:Microbiological Techniques / Q000191:economics / Q000379:methods*; D013048:Specimen Handling / Q000379:methods; D019032:Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization / Q000191:economics / Q000379:methods*; D013997:Time Factors