title: Comparison of some dispersion-corrected and traditional functionals as applied to peptides and conformations of cyclohexane derivatives.
abstract: We compare the energetic and structural properties of fully optimized α-helical and antiparallel β-sheet polyalanines and the energetic differences between axial and equatorial conformations of three cyclohexane derivatives (methyl, fluoro, and chloro) as calculated using several functionals designed to treat dispersion (B97-D, ωB97x-D, M06, M06L, and M06-2X) with other traditional functionals not specifically parametrized to treat dispersion (B3LYP, X3LYP, and PBE1PBE) and with experimental results. Those functionals developed to treat dispersion significantly overestimate interaction enthalpies of folding for the α-helix and predict unreasonable structures that contain Ramachandran φ and ψ and C = O...N H-bonding angles that are out of the bounds of databases compiled the β-sheets. These structures are consistent with overestimation of the interaction energies. For the cyclohexanes, these functionals overestimate the stabilities of the axial conformation, especially when used with smaller basis sets. Their performance improves when the basis set is improved from D95∗∗ to aug-cc-pVTZ (which would not be possible with systems as large as the peptides).
authors.affiliation: Department of Chemistry, City University of New York - Hunter College and the Graduate School, 695 Park Avenue, New York, New York 10065, USA.
authors.forename: Mateusz
authors.initials: M
authors.lastname: Marianski
authors.forename: Amparo
authors.initials: A
authors.lastname: Asensio
authors.forename: J J
authors.initials: JJ
authors.lastname: Dannenberg
mesh_terms: D003510:Cyclohexanes / Q000737:chemistry*; D008968:Molecular Conformation; D010455:Peptides / Q000737:chemistry*; D011789:Quantum Theory; D013816:Thermodynamics
chemical_list: D003510:Cyclohexanes; D010455:Peptides; C019529:polyalanine