Snakemake--a scalable bioinformatics workflow engine.
CONCLUSIONS
Snakemake is a workflow engine that provides a readable Python-based workflow definition language and a powerful execution environment that scales from single-core workstations to compute clusters without modifying the workflow. It is the first system to support the use of automatically inferred multiple named wildcards (or variables) in input and output filenames.


BACKGROUND
http://snakemake.googlecode.com.


BACKGROUND
johannes.koester@uni-due.de.
Genome Informatics, Institute of Human Genetics, University of Duisburg-Essen and Paediatric Oncology, University Childrens Hospital, 45147 Essen, Germany. johannes.koester@uni-due.de
Johannes
J
Köster
Sven
S
Rahmann
D019295:Computational Biology / Q000379:methods*; D001330:Electronic Data Processing; D011381:Programming Languages; D012984:Software; D057188:Workflow