Plant B vitamin pathways and their compartmentation: a guide for the perplexed.
The B vitamins and the cofactors derived from them are essential for life. B vitamin synthesis in plants is consequently as crucial to plants themselves as it is to humans and animals, whose B vitamin nutrition depends largely on plants. The synthesis and salvage pathways for the seven plant B vitamins are now broadly known, but certain enzymes and many transporters have yet to be identified, and the subcellular locations of various reactions are unclear. Although very substantial, what is not known about plant B vitamin pathways is regrettably difficult to discern from the literature or from biochemical pathway databases. Nor do databases accurately represent all that is known about B vitamin pathways-above all their compartmentation-because the facts are scattered throughout the literature, and thus hard to piece together. These problems (i) deter discoveries because newcomers to B vitamins cannot see which mysteries still need solving; and (ii) impede metabolic reconstruction and modelling of B vitamin pathways because genes for reactions or transport steps are missing. This review therefore takes a fresh approach to capture current knowledge of B vitamin pathways in plants. The synthesis pathways, key salvage routes, and their subcellular compartmentation are surveyed in depth, and encoded in the SEED database (http://pubseed.theseed.org/seedviewer.cgi?page=PlantGateway) for Arabidopsis and maize. The review itself and the encoded pathways specifically identify enigmatic or missing reactions, enzymes, and transporters. The SEED-encoded B vitamin pathway collection is a publicly available, expertly curated, one-stop resource for metabolic reconstruction and modeling.
Mathematics and Computer Science Division, Argonne National Laboratory,  9700 South Cass Avenue, Argonne, IL 60439  USA.
Svetlana
S
Gerdes
Claudia
C
Lerma-Ortiz
Océane
O
Frelin
Samuel M D
SM
Seaver
Christopher S
CS
Henry
Valérie
V
de Crécy-Lagard
Andrew D
AD
Hanson
D016208:Databases, Factual; D053858:Metabolic Networks and Pathways; D010940:Plant Proteins / Q000378:metabolism; D010944:Plants / Q000201:enzymology / Q000378:metabolism*; D014803:Vitamin B Complex / Q000096:biosynthesis*
D010940:Plant Proteins; D014803:Vitamin B Complex