Viral and atypical bacterial etiology of acute respiratory infections in children under 5 years old living in a rural tropical area of Madagascar.
BACKGROUND
In Madagascar, very little is known about the etiology and prevalence of acute respiratory infections (ARIs) in a rural tropical area. Recent data are needed to determine the viral and atypical bacterial etiologies in children with defined clinical manifestations of ARIs.


METHODS
During one year, we conducted a prospective study on ARIs in children between 2 to 59 months in the community hospital of Ampasimanjeva, located in the south-east of Madagascar. Respiratory samples were analyzed by multiplex real-time RT-PCR, including 18 viruses and 2 atypical bacteria. The various episodes of ARI were grouped into four clinical manifestations with well-documented diagnosis: "Community Acquired Pneumonia"(CAP, group I), "Other acute lower respiratory infections (Other ALRIs, group II)", "Upper respiratory tract infections with cough (URTIs with cough, group III)"and "Upper respiratory tract infections without cough (URTIs without cough, group IV)".


RESULTS
295 children were included in the study between February 2010 and February 2011. Viruses and/or atypical bacteria respiratory pathogens were detected in 74.6% of samples, the rate of co-infection was 27.3%. Human rhinovirus (HRV; 20.5%), metapneumovirus (HMPV A/B, 13.8%), coronaviruses (HCoV, 12.5%), parainfluenza virus (HPIV, 11.8%) and respiratory syncytial virus A and B (RSV A/B, 11.8%) were the most detected. HRV was predominantly single detected (23.8%) in all the clinical groups while HMPV A/B (23.9%) was mainly related to CAP (group I), HPIV (17.3%) to the "Other ALRIs" (group II), RSV A/B (19.5%) predominated in the group "URTIs with cough" (group III) and Adenovirus (HAdV, 17.8%) was mainly detected in the "without cough" (group IV).


CONCLUSIONS
This study describes for the first time the etiology of respiratory infections in febrile children under 5 years in a malaria rural area of Madagascar and highlights the role of respiratory viruses in a well clinically defined population of ARIs.
Centre d'Infectiologie Charles Mérieux, Faculty of Medicine, Antananarivo, Madagascar.
Jonathan
J
Hoffmann
Henintsoa
H
Rabezanahary
Martin
M
Randriamarotia
Arsène
A
Ratsimbasoa
Josette
J
Najjar
Guy
G
Vernet
Bénédicte
B
Contamin
Gláucia
G
Paranhos-Baccalà
D000208:Acute Disease; D001419:Bacteria / Q000145:classification / Q000235:genetics / Q000302:isolation & purification; D001424:Bacterial Infections / Q000150:complications / Q000453:epidemiology*; D002675:Child, Preschool; D060085:Coinfection; D017714:Community-Acquired Infections / Q000453:epidemiology / Q000209:etiology; D003371:Cough / Q000453:epidemiology / Q000209:etiology; D005334:Fever / Q000453:epidemiology / Q000209:etiology; D006801:Humans; D008270:Madagascar / Q000453:epidemiology; D018184:Paramyxoviridae Infections / Q000150:complications / Q000453:epidemiology; D016133:Polymerase Chain Reaction; D015995:Prevalence; D011446:Prospective Studies; D018357:Respiratory Syncytial Virus Infections / Q000150:complications / Q000453:epidemiology; D012141:Respiratory Tract Infections / Q000453:epidemiology* / Q000209:etiology; D012424:Rural Population / Q000706:statistics & numerical data*; D012621:Seasons; D014329:Tropical Climate; D014777:Virus Diseases / Q000150:complications / Q000453:epidemiology*; D014780:Viruses / Q000145:classification / Q000235:genetics / Q000302:isolation & purification