Self-consistent treatment of the local dielectric permittivity and electrostatic potential in solution for polarizable macromolecular force fields.
A self-consistent method is presented for the calculation of the local dielectric permittivity and electrostatic potential generated by a solute of arbitrary shape and charge distribution in a polar and polarizable liquid. The structure and dynamics behavior of the liquid at the solute/liquid interface determine the spatial variations of the density and the dielectric response. Emphasis here is on the treatment of the interface. The method is an extension of conventional methods used in continuum protein electrostatics, and can be used to estimate changes in the static dielectric response of the liquid as it adapts to charge redistribution within the solute. This is most relevant in the context of polarizable force fields, during electron structure optimization in quantum chemical calculations, or upon charge transfer. The method is computationally efficient and well suited for code parallelization, and can be used for on-the-fly calculations of the local permittivity in dynamics simulations of systems with large and heterogeneous charge distributions, such as proteins, nucleic acids, and polyelectrolytes. Numerical calculation of the system free energy is discussed for the general case of a liquid with field-dependent dielectric response.
Center for Molecular Modeling, DCB∕CIT, National Institutes of Health, U.S. DHHS, Bethesda, Maryland 20892, USA. hassan@mail.nih.gov
Sergio A
SA
Hassan
D004573:Electrolytes / Q000737:chemistry; D046911:Macromolecular Substances / Q000737:chemistry; D056004:Molecular Dynamics Simulation; D009696:Nucleic Acids / Q000737:chemistry*; D011108:Polymers / Q000737:chemistry*; D011506:Proteins / Q000737:chemistry*; D012996:Solutions; D055672:Static Electricity
D004573:Electrolytes; D046911:Macromolecular Substances; D009696:Nucleic Acids; D011108:Polymers; D011506:Proteins; D012996:Solutions