Association of a newly identified variant of DNA polymerase beta (polβΔ63-123, 208-304) with the risk factor of ovarian carcinoma in India.
BACKGROUND
DNA polymerase is a single-copy gene that is considered to be part of the DNA repair machinery in mammalian cells. The encoded enzyme is a key to the base excision repair (BER) pathway. It is evident that pol beta has mutations in various cancer samples, but little is known about ovarian cancer.


OBJECTIVE
Identification of any variant form of polβ cDNA in ovarian carcinoma and determination of association between the polymorphism and ovarian cancer risk in Indian patients. We used 152 samples to isolate and perform RT-PCR and sequencing.


RESULTS
A variant of polymerase beta (deletion of exon 4-6 and 11-13, comprising of amino acid 63-123, and 208-304) is detected in heterozygous condition. The product size of this variant is 532 bp while wild type pol beta is 1 kb. Our study of association between the variant and the endometrioid type shows that it is a statistically significant factor for ovarian cancer [OR=31.9 (4.12-246.25) with p<0.001]. The association between variant and stage IV patients further indicated risk (χ2 value of 29.7, and OR value 6.77 with 95% CI values 3.3-13.86). The correlation study also confirms the association data (Pearson correlation values for variant/stage IV and variant/endometrioid of 0.44 and 0.39).


CONCLUSIONS
Individuals from this part of India with this type of variant may be at risk of stage IV, endometrioid type ovarian carcinoma.
Department of Biotechnology, Haldia Institute of Technology, West Bengal, India.
Kalyani
K
Khanra
Chandan
C
Bhattacharya
Nandan
N
Bhattacharyya
D018262:Adenocarcinoma, Clear Cell / Q000209:etiology* / Q000473:pathology; D002288:Adenocarcinoma, Mucinous / Q000209:etiology* / Q000473:pathology; D018284:Cystadenocarcinoma, Serous / Q000209:etiology* / Q000473:pathology; D019951:DNA Polymerase beta / Q000235:genetics*; D004273:DNA, Neoplasm / Q000235:genetics; D016889:Endometrial Neoplasms / Q000209:etiology* / Q000473:pathology; D005091:Exons / Q000235:genetics; D005260:Female; D006801:Humans; D007194:India; D009154:Mutation / Q000235:genetics; D009367:Neoplasm Staging; D010051:Ovarian Neoplasms / Q000209:etiology* / Q000473:pathology; D016133:Polymerase Chain Reaction; D011110:Polymorphism, Genetic / Q000235:genetics*; D011379:Prognosis; D012307:Risk Factors; D017384:Sequence Deletion
D004273:DNA, Neoplasm; D019951:DNA Polymerase beta