Next-generation sequencing identifies a novel compound heterozygous mutation in MYO7A in a Chinese patient with Usher Syndrome 1B.
BACKGROUND
Targeted enrichment and next-generation sequencing (NGS) have been employed for detection of genetic diseases. The purpose of this study was to validate the accuracy and sensitivity of our method for comprehensive mutation detection of hereditary hearing loss, and identify inherited mutations involved in human deafness accurately and economically.


METHODS
To make genetic diagnosis of hereditary hearing loss simple and timesaving, we designed a 0.60 MB array-based chip containing 69 nuclear genes and mitochondrial genome responsible for human deafness and conducted NGS toward ten patients with five known mutations and a Chinese family with hearing loss (never genetically investigated).


RESULTS
Ten patients with five known mutations were sequenced using next-generation sequencing to validate the sensitivity of the method. We identified four known mutations in two nuclear deafness causing genes (GJB2 and SLC26A4), one in mitochondrial DNA. We then performed this method to analyze the variants in a Chinese family with hearing loss and identified compound heterozygosity for two novel mutations in gene MYO7A.


CONCLUSIONS
The compound heterozygosity identified in gene MYO7A causes Usher Syndrome 1B with severe phenotypes. The results support that the combination of enrichment of targeted genes and next-generation sequencing is a valuable molecular diagnostic tool for hereditary deafness and suitable for clinical application.
BGI-Shenzhen, Shenzhen, China.
Xiaoming
X
Wei
Yan
Y
Sun
Jiansheng
J
Xie
Quan
Q
Shi
Ning
N
Qu
Guanghui
G
Yang
Jun
J
Cai
Yi
Y
Yang
Yu
Y
Liang
Wei
W
Wang
Xin
X
Yi
D044466:Asian People / Q000235:genetics*; D001483:Base Sequence; D000072259:Connexin 26; D017630:Connexins; D004252:DNA Mutational Analysis / Q000379:methods*; D005260:Female; D006579:Heterozygote; D059014:High-Throughput Nucleotide Sequencing / Q000379:methods*; D006801:Humans; D008297:Male; D000081412:Myosin VIIa; D009218:Myosins / Q000235:genetics*; D017422:Sequence Analysis, DNA / Q000379:methods*; D052245:Usher Syndromes / Q000235:genetics*
D017630:Connexins; C000607042:GJB2 protein, human; C000631455:MYO7A protein, human; D000081412:Myosin VIIa; D000072259:Connexin 26; D009218:Myosins