title: The intergenic spacer region of the rDNA in Haplopappus gracilis (Nutt.) Gray.
abstract: In this paper, we provide further information on the genome organisation of Haplopappus gracilis, one of the six angiosperms showing the lowest chromosome number, i.e. 2n = 4, by determining the nucleotide sequence of the intergenic spacer region of the ribosomal RNA genes and its cytological localization on metaphase chromosomes. DNA sequence analysis reveals the occurring of a product of 4,382 bp in length, characterised by the presence of four blocks of different repeated sequences. Our analysis also evidenced putative promoter regions with three transcription initiation sites for polymerase I, as previously reported in Artemisia absinthium, belonging to the same Asteraceae family. A fluorescent in situ hybridization with the intergenic spacer probe indicates the presence of rDNA genes only in the satellited chromosomes of H. gracilis; besides, differences in the signal intensity between homologous chromosomes were frequently observed, thus suggesting for these chromosome sites the presence of a variable number of rDNA gene copies, even if a divergent chromatin organisation in corresponding regions cannot be ruled out.
authors.affiliation: Dipartimento di Biologia, Università di Pisa, via L. Ghini, 56100, Pisa, Italy.
authors.forename: M
authors.initials: M
authors.lastname: Ruffini Castiglione
authors.forename: M T
authors.initials: MT
authors.lastname: Gelati
authors.forename: R
authors.initials: R
authors.lastname: Cremonini
authors.forename: M
authors.initials: M
authors.lastname: Frediani
mesh_terms: D001483:Base Sequence; D002874:Chromosome Mapping; D032461:Chromosomes, Plant; D021903:DNA, Ribosomal Spacer / Q000235:genetics*; D017343:Genes, Plant; D031206:Haplopappus / Q000235:genetics*; D058977:Molecular Sequence Annotation; D008969:Molecular Sequence Data; D011401:Promoter Regions, Genetic; D012335:RNA, Ribosomal / Q000235:genetics; D012337:RNA, Ribosomal, 18S / Q000235:genetics; D012340:RNA, Ribosomal, 5.8S / Q000235:genetics; D017422:Sequence Analysis, DNA; D024363:Transcription Initiation Site
chemical_list: D021903:DNA, Ribosomal Spacer; D012335:RNA, Ribosomal; D012337:RNA, Ribosomal, 18S; D012340:RNA, Ribosomal, 5.8S; C065039:RNA, ribosomal, 25S