title: A simple biosynthetic pathway for large product generation from small substrate amounts.
abstract: A recently emerging discipline of synthetic biology has the aim of constructing new biosynthetic pathways with useful biological functions. A major application of these pathways is generating a large amount of the desired product. However, toxicity due to the possible presence of toxic precursors is one of the main problems for such production. We consider here the problem of generating a large amount of product from a potentially toxic substrate. To address this, we propose a simple biosynthetic pathway, which can be induced in order to produce a large number of the product molecules, by keeping the substrate amount at low levels. Surprisingly, we show that the large product generation crucially depends on fast non-specific degradation of the substrate molecules. We derive an optimal induction strategy, which allows as much as three orders of magnitude increase in the product amount through biologically realistic parameter values. We point to a recently discovered bacterial immune system (CRISPR/Cas in E. coli) as a putative example of the pathway analysed here. We also argue that the scheme proposed here can be used not only as a stand-alone pathway, but also as a strategy to produce a large amount of the desired molecules with small perturbations of endogenous biosynthetic pathways.
authors.affiliation: Institute of Physiology and Biochemistry, Faculty of Biology, University of Belgrade, Serbia. dmarko@bio.bg.ac.rs
authors.forename: Marko
authors.initials: M
authors.lastname: Djordjevic
authors.forename: Magdalena
authors.initials: M
authors.lastname: Djordjevic
mesh_terms: D053898:Biosynthetic Pathways; D004926:Escherichia coli / Q000378:metabolism; D008954:Models, Biological; D058615:Synthetic Biology / Q000379:methods*