title: Realistic simulations of the coupling between the protomotive force and the mechanical rotation of the F0-ATPase.
abstract: The molecular origin of the action of the F(0) proton gradient-driven rotor presents a major puzzle despite significant structural advances. Although important conceptual models have provided guidelines of how such systems should work, it has been challenging to generate a structure-based molecular model using physical principles that will consistently lead to the unidirectional proton-driven rotational motion during ATP synthesis. This work uses a coarse-grained (CG) model to simulate the energetics of the F(0)-ATPase system in the combined space defined by the rotational coordinate and the proton transport (PTR) from the periplasmic side (P) to the cytoplasmic side (N). The model establishes the molecular origin of the rotation, showing that this effect is due to asymmetry in the energetics of the proton path rather than only the asymmetry of the interaction of the Asp on the c-ring helices and Arg on the subunit-a. The simulation provides a clear conceptual background for further exploration of the electrostatic basis of proton-driven mechanochemical systems.
authors.affiliation: Department of Chemistry, University of Southern California, 418 SGM Building, 3620 McClintock Avenue, Los Angeles, CA 90089-1062, USA.
authors.forename: Shayantani
authors.initials: S
authors.lastname: Mukherjee
authors.forename: Arieh
authors.initials: A
authors.lastname: Warshel
mesh_terms: D000255:Adenosine Triphosphate / Q000096:biosynthesis*; D056004:Molecular Dynamics Simulation; D018892:Proton-Motive Force / Q000502:physiology*; D006180:Proton-Translocating ATPases / Q000737:chemistry*; D012399:Rotation; D055672:Static Electricity
chemical_list: D000255:Adenosine Triphosphate; D006180:Proton-Translocating ATPases