title: Versatility in corrinoid salvaging and remodeling pathways supports corrinoid-dependent metabolism in Dehalococcoides mccartyi.
abstract: Corrinoids are cobalt-containing molecules that function as enzyme cofactors in a wide variety of organisms but are produced solely by a subset of prokaryotes. Specific corrinoids are identified by the structure of their axial ligands. The lower axial ligand of a corrinoid can be a benzimidazole, purine, or phenolic compound. Though it is known that many organisms obtain corrinoids from the environment, the variety of corrinoids that can serve as cofactors for any one organism is largely unstudied. Here, we examine the range of corrinoids that function as cofactors for corrinoid-dependent metabolism in Dehalococcoides mccartyi strain 195. Dehalococcoides bacteria play an important role in the bioremediation of chlorinated solvents in the environment because of their unique ability to convert the common groundwater contaminants perchloroethene and trichloroethene to the innocuous end product ethene. All isolated D. mccartyi strains require exogenous corrinoids such as vitamin B(12) for growth. However, like many other corrinoid-dependent bacteria, none of the well-characterized D. mccartyi strains has been shown to be capable of synthesizing corrinoids de novo. In this study, we investigate the ability of D. mccartyi strain 195 to use specific corrinoids, as well as its ability to modify imported corrinoids to a functional form. We show that strain 195 can use only specific corrinoids containing benzimidazole lower ligands but is capable of remodeling other corrinoids by lower ligand replacement when provided a functional benzimidazole base. This study of corrinoid utilization and modification by D. mccartyi provides insight into the array of strategies that microorganisms employ in acquiring essential nutrients from the environment.
authors.affiliation: Department of Civil and Environmental Engineering, University of California, Berkeley, California, USA.
authors.forename: Shan
authors.initials: S
authors.lastname: Yi
authors.forename: Erica C
authors.initials: EC
authors.lastname: Seth
authors.forename: Yu-Jie
authors.initials: YJ
authors.lastname: Men
authors.forename: Sally P
authors.initials: SP
authors.lastname: Stabler
authors.forename: Robert H
authors.initials: RH
authors.lastname: Allen
authors.forename: Lisa
authors.initials: L
authors.lastname: Alvarez-Cohen
authors.forename: Michiko E
authors.initials: ME
authors.lastname: Taga
mesh_terms: D001673:Biodegradation, Environmental; D041862:Chloroflexi / Q000235:genetics* / Q000378:metabolism*; D003035:Cobalt / Q000737:chemistry / Q000378:metabolism; D045728:Corrinoids / Q000737:chemistry / Q000378:metabolism*; D005030:Ethylenes / Q000096:biosynthesis; D013750:Tetrachloroethylene / Q000378:metabolism; D014241:Trichloroethylene / Q000378:metabolism
chemical_list: D045728:Corrinoids; D005030:Ethylenes; D014241:Trichloroethylene; D003035:Cobalt; C036216:ethylene; D013750:Tetrachloroethylene