title: iBRAIN2: automated analysis and data handling for RNAi screens.
abstract: We report on the implementation of a software suite dedicated to the management and analysis of large scale RNAi High Content Screening (HCS). We describe the requirements identified amongst our different users, the supported data flow, and the implemented software. Our system is already supporting productively three different laboratories operating in distinct IT infrastructures. The system was already used to analyze hundreds of RNAi HCS plates.
authors.affiliation: University of Basel, Switzerland.
authors.forename: Vincent
authors.initials: V
authors.lastname: Rouilly
authors.forename: Eva
authors.initials: E
authors.lastname: Pujadas
authors.forename: Béla
authors.initials: B
authors.lastname: Hullár
authors.forename: Csaba
authors.initials: C
authors.lastname: Balázs
authors.forename: Peter
authors.initials: P
authors.lastname: Kunszt
authors.forename: Michael
authors.initials: M
authors.lastname: Podvinec
mesh_terms: D000465:Algorithms; D003628:Database Management Systems; D030541:Databases, Genetic; D016247:Information Storage and Retrieval / Q000379:methods*; D020407:Internet; D034622:RNA Interference; D017423:Sequence Analysis, RNA / Q000379:methods*; D012984:Software