title: Isolation of a variant human adenovirus identified based on phylogenetic analysis during an outbreak of acute keratoconjunctivitis in Chennai.
abstract: OBJECTIVE
  Though several viruses are responsible for conjunctivitis, but human adenovirus (HAdV) is by far the most common cause. Epidemic conjunctivitis causes morbidity and early detection of aetiological agent is essential in preventing spread of disease as some of serotypes of adenoviruses cause a severe form of conjunctivitis. This study was undertaken to identify the causative agent of conjunctivitis outbreak in Chennai in 2010.
  
  
  METHODS
  Conjunctival samples collected from 17 patients with conjunctivitis were subjected to virological investigations. Culture and PCR for detection of adenovirus and enterovirus were carried out. PCR positive products were further subjected for DNA sequencing. The nucleotide sequences of the hexons of isolates were analyzed by comparison with all 51 human adenovirus strains. Phylogenetic tree was constructed using DAMBE software.
  
  
  RESULTS
  Among 17 patients, seven were positive for adenovirus by PCR on the direct specimen, none was positive for enterovirus. Eleven of 30 conjunctival swabs showed cytopathic effect in HEp-2 cell line and were confirmed as HAdV by PCR. The DNA sequence data of the 11 isolates had equal percentage of homology with HAdV 6 and 2 on blast analysis. On phylogenetic analysis with GeneBank data of 51 adenovirus strains, 11 isolates from patients during the outbreak of conjunctivitis formed a separate clade indicating a new variant strain.
  
  
  CONCLUSIONS
  Based on phylogenetic analysis it was concluded that the recent conjunctivitis outbreak that occurred in Chennai was caused by a variant adenovirus strain.
authors.affiliation: L & T Microbiology Research Center, Sankara Nethralaya, Chennai, India.
authors.forename: M K
authors.initials: MK
authors.lastname: Janani
authors.forename: J
authors.initials: J
authors.lastname: Malathi
authors.forename: H N
authors.initials: HN
authors.lastname: Madhavan
mesh_terms: D000260:Adenoviruses, Human / Q000235:genetics* / Q000302:isolation & purification; D000328:Adult; D000368:Aged; D004196:Disease Outbreaks; D005260:Female; D056945:Hep G2 Cells; D006801:Humans; D007194:India / Q000453:epidemiology; D007637:Keratoconjunctivitis / Q000453:epidemiology / Q000235:genetics* / Q000821:virology*; D008297:Male; D008875:Middle Aged; D017720:Molecular Epidemiology; D010802:Phylogeny; D017422:Sequence Analysis, DNA