title: A new avenue for classification and prediction of olive cultivars using supervised and unsupervised algorithms.
abstract: Various methods have been used to identify cultivares of olive trees; herein we used different bioinformatics algorithms to propose new tools to classify 10 cultivares of olive based on RAPD and ISSR genetic markers datasets generated from PCR reactions. Five RAPD markers (OPA0a21, OPD16a, OP01a1, OPD16a1 and OPA0a8) and five ISSR markers (UBC841a4, UBC868a7, UBC841a14, U12BC807a and UBC810a13) selected as the most important markers by all attribute weighting models. K-Medoids unsupervised clustering run on SVM dataset was fully able to cluster each olive cultivar to the right classes. All trees (176) induced by decision tree models generated meaningful trees and UBC841a4 attribute clearly distinguished between foreign and domestic olive cultivars with 100% accuracy. Predictive machine learning algorithms (SVM and Naïve Bayes) were also able to predict the right class of olive cultivares with 100% accuracy. For the first time, our results showed data mining techniques can be effectively used to distinguish between plant cultivares and proposed machine learning based systems in this study can predict new olive cultivars with the best possible accuracy.
authors.affiliation: Department of Biology, School of Basic Sciences and Bioinformatics Research Group, University of Qom, Qom, Iran.
authors.forename: Amir H
authors.initials: AH
authors.lastname: Beiki
authors.forename: Saba
authors.initials: S
authors.lastname: Saboor
authors.forename: Mansour
authors.initials: M
authors.lastname: Ebrahimi
mesh_terms: D000383:Agriculture / Q000379:methods*; D000465:Algorithms; D001185:Artificial Intelligence; D016000:Cluster Analysis; D019295:Computational Biology / Q000379:methods; D057225:Data Mining / Q000379:methods; D003663:Decision Trees; D017343:Genes, Plant; D005819:Genetic Markers; D031658:Olea / Q000254:growth & development / Q000502:physiology*; D015203:Reproducibility of Results
chemical_list: D005819:Genetic Markers