title: Hydrogen bonding between the Q(B) site ubisemiquinone and Ser-L223 in the bacterial reaction center: a combined spectroscopic and computational perspective.
abstract: In the Q(B) site of the Rhodobacter sphaeroides photosynthetic reaction center, the donation of a hydrogen bond from the hydroxyl group of Ser-L223 to the ubisemiquinone formed after the first flash is debatable. In this study, we use a combination of spectroscopy and quantum mechanics/molecular mechanics (QM/MM) calculations to comprehensively explore this topic. We show that ENDOR, ESEEM, and HYSCORE spectroscopic differences between mutant L223SA and the wild-type sample (WT) are negligible, indicating only minor perturbations in the ubisemiquinone spin density for the mutant sample. Qualitatively, this suggests that a strong hydrogen bond does not exist in the WT between the Ser-L223 hydroxyl group and the semiquinone O(1) atom, as removal of this hydrogen bond in the mutant should cause a significant redistribution of spin density in the semiquinone. We show quantitatively, using QM/MM calculations, that a WT model in which the Ser-L223 hydroxyl group is rotated to prevent hydrogen bond formation with the O(1) atom of the semiquinone predicts negligible change for the L223SA mutant. This, together with the better agreement between key QM/MM calculated and experimental hyperfine couplings for the non-hydrogen-bonded model, leads us to conclude that no strong hydrogen bond is formed between the Ser-L223 hydroxyl group and the semiquinone O(1) atom after the first flash. The implications of this finding for quinone reduction in photosynthetic reaction centers are discussed.
authors.affiliation: Center for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States.
authors.forename: Erik
authors.initials: E
authors.lastname: Martin
authors.forename: Amgalanbaatar
authors.initials: A
authors.lastname: Baldansuren
authors.forename: Tzu-Jen
authors.initials: TJ
authors.lastname: Lin
authors.forename: Rimma I
authors.initials: RI
authors.lastname: Samoilova
authors.forename: Colin A
authors.initials: CA
authors.lastname: Wraight
authors.forename: Sergei A
authors.initials: SA
authors.lastname: Dikanov
authors.forename: Patrick J
authors.initials: PJ
authors.lastname: O'Malley
mesh_terms: D004578:Electron Spin Resonance Spectroscopy; D006860:Hydrogen Bonding; D045322:Photosynthetic Reaction Center Complex Proteins / Q000737:chemistry / Q000235:genetics / Q000378:metabolism; D011789:Quantum Theory; D012242:Rhodobacter sphaeroides / Q000737:chemistry / Q000378:metabolism; D013057:Spectrum Analysis; D014451:Ubiquinone / Q000031:analogs & derivatives* / Q000737:chemistry / Q000235:genetics
chemical_list: D045322:Photosynthetic Reaction Center Complex Proteins; D014451:Ubiquinone; C024989:coenzyme Q10