title: Hydrogen-bonded networks along and bifurcation of the E-pathway in quinol:fumarate reductase.
abstract: The E-pathway of transmembrane proton transfer has been demonstrated previously to be essential for catalysis by the diheme-containing quinol:fumarate reductase (QFR) of Wolinella succinogenes. Two constituents of this pathway, Glu-C180 and heme b(D) ring C (b(D)-C-) propionate, have been validated experimentally. Here, we identify further constituents of the E-pathway by analysis of molecular dynamics simulations. The redox state of heme groups has a crucial effect on the connectivity patterns of mobile internal water molecules that can transiently support proton transfer from the b(D)-C-propionate to Glu-C180. The short H-bonding paths formed in the reduced states can lead to high proton conduction rates and thus provide a plausible explanation for the required opening of the E-pathway in reduced QFR. We found evidence that the b(D)-C-propionate group is the previously postulated branching point connecting proton transfer to the E-pathway from the quinol-oxidation site via interactions with the heme b(D) ligand His-C44. An essential functional role of His-C44 is supported experimentally by site-directed mutagenesis resulting in its replacement with Glu. Although the H44E variant enzyme retains both heme groups, it is unable to catalyze quinol oxidation. All results obtained are relevant to the QFR enzymes from the human pathogens Campylobacter jejuni and Helicobacter pylori.
authors.affiliation: Department of Molecular Membrane Biology, Max Planck Institute of Biophysics, Frankfurt am Main, Germany.
authors.forename: Elena
authors.initials: E
authors.lastname: Herzog
authors.forename: Wei
authors.initials: W
authors.lastname: Gu
authors.forename: Hanno D
authors.initials: HD
authors.lastname: Juhnke
authors.forename: Alexander H
authors.initials: AH
authors.lastname: Haas
authors.forename: Werner
authors.initials: W
authors.lastname: Mäntele
authors.forename: Jörg
authors.initials: J
authors.lastname: Simon
authors.forename: Volkhard
authors.initials: V
authors.lastname: Helms
authors.forename: C Roy D
authors.initials: CR
authors.lastname: Lancaster
mesh_terms: D002462:Cell Membrane / Q000378:metabolism; D018698:Glutamic Acid / Q000378:metabolism; D006860:Hydrogen Bonding; D008024:Ligands; D056004:Molecular Dynamics Simulation; D016297:Mutagenesis, Site-Directed; D010084:Oxidation-Reduction; D010088:Oxidoreductases / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism*; D011422:Propionates / Q000378:metabolism; D011487:Protein Conformation; D011522:Protons; D014867:Water / Q000378:metabolism; D016968:Wolinella / Q000201:enzymology
chemical_list: D008024:Ligands; D011422:Propionates; D011522:Protons; D014867:Water; D018698:Glutamic Acid; D010088:Oxidoreductases; C424907:quinol fumarate reductase; C029658:propionic acid