title: Characterization of an AGAMOUS-like MADS box protein, a probable constituent of flowering and fruit ripening regulatory system in banana.
abstract: The MADS-box family of genes has been shown to play a significant role in the development of reproductive organs, including dry and fleshy fruits. In this study, the molecular properties of an AGAMOUS like MADS box transcription factor in banana cultivar Giant governor (Musa sp, AAA group, subgroup Cavendish) has been elucidated. We have detected a CArG-box sequence binding AGAMOUS MADS-box protein in banana flower and fruit nuclear extracts in DNA-protein interaction assays. The protein fraction in the DNA-protein complex was analyzed by mass spectrometry and using this information we have obtained the full length cDNA of the corresponding protein. The deduced protein sequence showed ~95% amino acid sequence homology with MA-MADS5, a MADS-box protein described previously from banana. We have characterized the domains of the identified AGAMOUS MADS-box protein involved in DNA binding and homodimer formation in vitro using full-length and truncated versions of affinity purified recombinant proteins. Furthermore, in order to gain insight about how DNA bending is achieved by this MADS-box factor, we performed circular permutation and phasing analysis using the wild type recombinant protein. The AGAMOUS MADS-box protein identified in this study has been found to predominantly accumulate in the climacteric fruit pulp and also in female flower ovary. In vivo and in vitro assays have revealed specific binding of the identified AGAMOUS MADS-box protein to CArG-box sequence in the promoters of major ripening genes in banana fruit. Overall, the expression patterns of this MADS-box protein in banana female flower ovary and during various phases of fruit ripening along with the interaction of the protein to the CArG-box sequence in the promoters of major ripening genes lead to interesting assumption about the possible involvement of this AGAMOUS MADS-box factor in banana fruit ripening and floral reproductive organ development.
authors.affiliation: Division of Plant Biology, Bose Institute, Kolkata, West Bengal, India. src.bose@gmail.com
authors.forename: Swarup
authors.initials: S
authors.lastname: Roy Choudhury
authors.forename: Sujit
authors.initials: S
authors.lastname: Roy
authors.forename: Anish
authors.initials: A
authors.lastname: Nag
authors.forename: Sanjay Kumar
authors.initials: SK
authors.lastname: Singh
authors.forename: Dibyendu N
authors.initials: DN
authors.lastname: Sengupta
mesh_terms: D000595:Amino Acid Sequence; D001483:Base Sequence; D002467:Cell Nucleus / Q000378:metabolism; D003001:Cloning, Molecular; D018076:DNA, Complementary / Q000378:metabolism; D018744:DNA, Plant / Q000235:genetics; D019281:Dimerization; D035264:Flowers / Q000378:metabolism*; D005638:Fruit / Q000378:metabolism*; D018506:Gene Expression Regulation, Plant; D026161:MADS Domain Proteins / Q000737:chemistry / Q000235:genetics* / Q000502:physiology*; D008969:Molecular Sequence Data; D028521:Musa / Q000235:genetics* / Q000378:metabolism*; D010940:Plant Proteins / Q000235:genetics; D011401:Promoter Regions, Genetic; D011485:Protein Binding; D017422:Sequence Analysis, DNA; D014157:Transcription Factors / Q000378:metabolism
chemical_list: D018076:DNA, Complementary; D018744:DNA, Plant; D026161:MADS Domain Proteins; D010940:Plant Proteins; D014157:Transcription Factors