title: Cortical thickness and central surface estimation.
abstract: Several properties of the human brain cortex, e.g., cortical thickness and gyrification, have been found to correlate with the progress of neuropsychiatric disorders. The relationship between brain structure and function harbors a broad range of potential uses, particularly in clinical contexts, provided that robust methods for the extraction of suitable representations of the brain cortex from neuroimaging data are available. One such representation is the computationally defined central surface (CS) of the brain cortex. Previous approaches to semi-automated reconstruction of this surface relied on image segmentation procedures that required manual interaction, thereby rendering them error-prone and complicating the analysis of brains that were not from healthy human adults. Validation of these approaches and thickness measures is often done only for simple artificial phantoms that cover just a few standard cases. Here, we present a new fully automated method that allows for measurement of cortical thickness and reconstructions of the CS in one step. It uses a tissue segmentation to estimate the WM distance, then projects the local maxima (which is equal to the cortical thickness) to other GM voxels by using a neighbor relationship described by the WM distance. This projection-based thickness (PBT) allows the handling of partial volume information, sulcal blurring, and sulcal asymmetries without explicit sulcus reconstruction via skeleton or thinning methods. Furthermore, we introduce a validation framework using spherical and brain phantoms that confirms accurate CS construction and cortical thickness measurement under a wide set of parameters for several thickness levels. The results indicate that both the quality and computational cost of our method are comparable, and may be superior in certain respects, to existing approaches.
authors.affiliation: Department of Psychiatry, University of Jena, Jahnstrasse 3, D-07743 Jena, Germany. robert.dahnke@uni-jena.de
authors.forename: Robert
authors.initials: R
authors.lastname: Dahnke
authors.forename: Rachel Aine
authors.initials: RA
authors.lastname: Yotter
authors.forename: Christian
authors.initials: C
authors.lastname: Gaser
mesh_terms: D000328:Adult; D000465:Algorithms; D001921:Brain / Q000033:anatomy & histology*; D001931:Brain Mapping / Q000379:methods*; D006801:Humans; D007089:Image Enhancement / Q000379:methods; D007090:Image Interpretation, Computer-Assisted / Q000379:methods*; D021621:Imaging, Three-Dimensional / Q000379:methods; D008279:Magnetic Resonance Imaging; D019047:Phantoms, Imaging