title: Fragment molecular orbital study on electron tunneling mechanisms in bacterial photosynthetic reaction center.
abstract: The tunneling mechanisms of electron transfers (ETs) in photosynthetic reaction center of  Blastochloris viridis  are studied by the ab initio fragment molecular orbital (FMO) method combined with the generalized Mulliken-Hush (GMH) and the bridge Green function (GF) calculations of the electronic coupling T(DA) and the tunneling current method for the ET pathway analysis at the fragment-based resolution. For the ET from batctriopheophytin (H(L)) to menaquinone (MQ), a major tunneling current through Trp M250 and a minor back flow via Ala M215, Ala M216, and His M217 are quantified. For the ET from MQ to ubiquinone, the major tunneling pathway via the nonheme Fe(2+) and His L190 is identified as well as minor pathway via His M217 and small back flows involving His L230, Glu M232, and His M264. At the given molecular structure from X-ray experiment, the spin state of the Fe(2+) ion, its replacement by Zn(2+), or its removal are found to affect the T(DA) value by factors within 2.2. The calculated T(DA) values, together with experimentally estimated values of the driving force and the reorganization energy, give the ET rates in reasonable agreement with experiments.
authors.affiliation: Department of Chemistry, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto, Japan. nishioka@kuchem.kyoto-u.ac.jp
authors.forename: Hirotaka
authors.initials: H
authors.lastname: Kitoh-Nishioka
authors.forename: Koji
authors.initials: K
authors.lastname: Ando
mesh_terms: D004579:Electron Transport; D041921:Hyphomicrobiaceae / Q000201:enzymology* / Q000378:metabolism; D008958:Models, Molecular; D010674:Pheophytins / Q000737:chemistry / Q000378:metabolism; D045322:Photosynthetic Reaction Center Complex Proteins / Q000737:chemistry* / Q000378:metabolism*; D011487:Protein Conformation; D011789:Quantum Theory; D014451:Ubiquinone / Q000737:chemistry / Q000378:metabolism; D024482:Vitamin K 2 / Q000737:chemistry / Q000378:metabolism
chemical_list: D010674:Pheophytins; D045322:Photosynthetic Reaction Center Complex Proteins; D024482:Vitamin K 2; D014451:Ubiquinone; C006678:bacteriopheophytin