title: Tana1, a new putatively active Tc1-like transposable element in the genome of sturgeons.
abstract: We report the discovery of a new putatively active Tc1-like transposable element (Tana1) in the genome of sturgeons, an ancient group of fish considered as living fossils. The complete sequence of Tana1 was first characterized in the 454-sequenced transcriptome of the Adriatic sturgeon (Acipenser naccarii) and then isolated from the genome of the same species and from 12 additional sturgeons including three genera of the Acipenseridae (Acipenser, Huso, Scaphirhynchus). The element has a total length of 1588bp and presents inverted repeats of 210bp, one of which partially overlapping the 3' region of the transposase gene. The spacing of the DDE motif within the catalytic domain in Tana1 is unique (DD38E) and indicates that Tana1 can be considered as the first representative of a new Tc1 subfamily. The integrity of the native form (with no premature termination codons within the transposase), the presence of all expected functional domains and its occurrence in the sturgeon transcriptome suggest a current or recent activity of Tana1. The presence of Tana1 in the genome of the 13 sturgeon species in our study points to an ancient origin of the element that existed before the split of the group 170 million years ago. The dissemination of Tana1 across sturgeon genomes could be interpreted by postulating vertical transmission from an ancestral Tana1 with a particularly slow evolutionary rate Horizontal transmission might have also played a role in the dissemination of Tana1 as evidenced by the presence of a complete copy in the genome of Atlantic salmon. Vertical and horizontal transmission are not mutually exclusive and may have concurred in shaping the evolution of Tana1.
authors.affiliation: Department of Biology, University of Padova, I-35131 Padova, Italy.
authors.forename: José Martin
authors.initials: JM
authors.lastname: Pujolar
authors.forename: Laura
authors.initials: L
authors.lastname: Astolfi
authors.forename: Elisa
authors.initials: E
authors.lastname: Boscari
authors.forename: Michele
authors.initials: M
authors.lastname: Vidotto
authors.forename: Federica
authors.initials: F
authors.lastname: Barbisan
authors.forename: Alice
authors.initials: A
authors.lastname: Bruson
authors.forename: Leonardo
authors.initials: L
authors.lastname: Congiu
mesh_terms: D000595:Amino Acid Sequence; D000818:Animals; D003001:Cloning, Molecular; D004251:DNA Transposable Elements / Q000235:genetics*; D019143:Evolution, Molecular; D005399:Fishes / Q000145:classification / Q000235:genetics*; D018628:Gene Dosage; D008969:Molecular Sequence Data; D010802:Phylogeny; D017422:Sequence Analysis, DNA
chemical_list: D004251:DNA Transposable Elements