title: Metabotyping of the C. elegans sir-2.1 mutant using in vivo labeling and (13)C-heteronuclear multidimensional NMR metabolomics.
abstract: The roles of sir-2.1 in C. elegans lifespan extension have been subjects of recent public and academic debates. We applied an efficient workflow for in vivo(13)C-labeling of C. elegans and (13)C-heteronuclear NMR metabolomics to characterizing the metabolic phenotypes of the sir-2.1 mutant. Our method delivered sensitivity 2 orders of magnitude higher than that of the unlabeled approach, enabling 2D and 3D NMR experiments. Multivariate analysis of the NMR data showed distinct metabolic profiles of the mutant, represented by increases in glycolysis, nitrogen catabolism, and initial lipolysis. The metabolomic analysis defined the sir-2.1 mutant metabotype as the decoupling between enhanced catabolic pathways and ATP generation. We also suggest the relationship between the metabotypes, especially the branched chain amino acids, and the roles of sir-2.1 in the worm lifespan. Our results should contribute to solidifying the roles of sir-2.1, and the described workflow can be applied to studying many other proteins in metabolic perspectives.
authors.affiliation: College of Pharmacy, Natural Product Research Institute, Seoul National University, Sillim-dong, Gwanak-gu, Seoul, 151-724, Korea.
authors.forename: Yong Jin
authors.initials: YJ
authors.lastname: An
authors.forename: Wen Jun
authors.initials: WJ
authors.lastname: Xu
authors.forename: Xing
authors.initials: X
authors.lastname: Jin
authors.forename: He
authors.initials: H
authors.lastname: Wen
authors.forename: Hyesook
authors.initials: H
authors.lastname: Kim
authors.forename: Junho
authors.initials: J
authors.lastname: Lee
authors.forename: Sunghyouk
authors.initials: S
authors.lastname: Park
mesh_terms: D000818:Animals; D017173:Caenorhabditis elegans / Q000235:genetics / Q000378:metabolism*; D002247:Carbon Isotopes; D055432:Metabolomics; D009154:Mutation; D019906:Nuclear Magnetic Resonance, Biomolecular / Q000379:methods*
chemical_list: D002247:Carbon Isotopes