title: Myoglobin unfolding in crowding and confinement.
abstract: Crowding and confinement have often been used synonymously with regard to their effect on the structure and dynamics of proteins. In this work, we have investigated the unfolding of the protein myoglobin (Mb) entrapped in the confinement of the water pool of AOT reverse micelles and in the presence of some commonly used macromolecular crowding agents (Ficoll 70, Dextran 70, and Dextran 40). Our results reveal that confinement effects can be quite destabilizing in nature for Mb with the extent of distortion depending on a host of factors apart from the size of the confining cage. Effects of the crowding agents on myoglobin also show a deviation from the general notion that synthetic macromolecular crowding agents are always stabilizing in nature. Ficoll 70 was observed to be particularly destabilizing in its influence on Mb unfolding. Moreover, tryptophan lifetime studies point to the fact that the Trp-heme distance in Mb might not always be a reliable probe of the secondary structural dissolution of the protein.
authors.affiliation: Department of Chemistry, Indian Institute of Technology Delhi, Hauz Khas, New Delhi.
authors.forename: Ashima
authors.initials: A
authors.lastname: Malik
authors.forename: Jayanta
authors.initials: J
authors.lastname: Kundu
authors.forename: Sanjib K
authors.initials: SK
authors.lastname: Mukherjee
authors.forename: Pramit K
authors.initials: PK
authors.lastname: Chowdhury
mesh_terms: D000818:Animals; D002021:Buffers; D004143:Dioctyl Sulfosuccinic Acid / Q000737:chemistry*; D008823:Micelles; D009211:Myoglobin / Q000737:chemistry*; D011489:Protein Denaturation; D058767:Protein Unfolding; D012995:Solubility; D013696:Temperature; D014867:Water / Q000737:chemistry
chemical_list: D002021:Buffers; D008823:Micelles; D009211:Myoglobin; D014867:Water; D004143:Dioctyl Sulfosuccinic Acid