title: Liver specificity of the carcinogenicity of NOCs: a chemical-molecular perspective.
abstract: This study aimed to determine the most significant molecular features associated with the liver specificity of the carcinogenicity of N-nitroso compounds (NOCs). Accordingly, quantitative structure-activity relationship (QSAR) analysis was performed to extract molecular information from NOCs using a topological substructural molecular descriptor (TOPS-MODE) approach. A linear discriminant analysis (LDA) model of a series of NOCs for rat liver was developed using TOPS-MODE descriptors to predict nonliver- and liver-carcinogenic NOCs. Two descriptors exclusively calculated from the molecular structures of the compounds were selected by a genetic algorithm. The descriptors were then weighted with bond distances as well as the Abraham solute descriptor partition between water and aqueous solvent systems to indicate the importance of their roles in liver specificity. The performances of the LDA model were rigorously validated by leave-one-out cross-validation and external validation, with the prediction accuracy reaching 88.3% and 80.0%, respectively. The contributions of the different molecular fragments to rat-liver specificity were computed. The results served as important information related to liver specificity and were analyzed from the chemical-molecular perspective. The resulting model can provide an efficient method to discriminate between as well as extrapolate nonliver- and liver-carcinogenic NOCs. The contribution of the entire nitrosamine molecule was determined as being responsible for the liver specificity of nitrosamine carcinogenicity. Although the QSAR showed limitations in complex hepatocarcinogenicity, the proposed method may considerably help elucidate the role of nitrosamines in liver specificity from the chemical-molecular perspective. The nature of these enzyme-substrate interactions is characterized. Insight into the chemical-structural and biological factors related to the liver-specific biological activity of NOCs is also provided.
authors.affiliation: Key Laboratory of Environmental Medicine Engineering, Ministry of Education, School of Public Health, Southeast University, Nanjing, 210009, China.
authors.forename: Jintao
authors.initials: J
authors.lastname: Yuan
authors.forename: Yuepu
authors.initials: Y
authors.lastname: Pu
authors.forename: Lihong
authors.initials: L
authors.lastname: Yin
mesh_terms: D000465:Algorithms; D000818:Animals; D001681:Biological Assay; D015197:Carcinogenicity Tests; D002273:Carcinogens / Q000633:toxicity*; D016208:Databases, Factual; D008099:Liver / Q000187:drug effects*; D015394:Molecular Structure; D009603:Nitroso Compounds / Q000633:toxicity*; D021281:Quantitative Structure-Activity Relationship; D051381:Rats; D012680:Sensitivity and Specificity
chemical_list: D002273:Carcinogens; D009603:Nitroso Compounds