Clinical integration of next-generation sequencing technology.
Recent advances in next-generation sequencing (NGS) methods and technology have substantially reduced costs and operational complexity leading to production of benchtop sequencers and commercial software solutions for implementation in small research and clinical laboratories. This article addresses requirements and limitations to successful implementation of these systems, including (1) calibration and validation of the instrumentation, experimental paradigm, and primary readout, (2) secure data transfer, storage, and secondary processing, (3) implementation of software tools for targeted analysis, and (4) training of research and clinical personnel to evaluate data fidelity and interpret the molecular significance of the genomic output.
Department of Pathology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261, USA.
R R
RR
Gullapalli
M
M
Lyons-Weiler
P
P
Petrosko
R
R
Dhir
M J
MJ
Becich
W A
WA
LaFramboise
D023281:Genomics / Q000379:methods; D006801:Humans; D025202:Molecular Diagnostic Techniques / Q000379:methods* / Q000639:trends; D009369:Neoplasms / Q000175:diagnosis / Q000235:genetics; D010338:Pathology, Clinical / Q000379:methods* / Q000639:trends; D017422:Sequence Analysis, DNA / Q000379:methods* / Q000639:trends