Tumor-microenvironment interactions studied by zonal transcriptional profiling of squamous cell lung carcinoma.
Invasion is a critical step in lung tumor progression. The interaction between tumor cells and their surroundings may play an important role in tumor invasion and metastasis. To better understand the mechanisms of tumor invasion and tumor-microenvironment interactions in lung tumors, total RNA was isolated from the inner tumor, tumor invasion front, adjacent lung, and distant normal lung tissue from 17 patients with primary squamous cell lung carcinoma using punch-aided laser capture microdissection. Messenger RNA expression profiles were obtained by microarray analysis, and microRNA profiles were generated from eight of these samples using TaqMan Low Density Arrays. Statistical analysis of the expression data showed extensive changes in gene expression in the inner tumor and tumor front compared with the normal lung and adjacent lung tissue. Only a few genes were differentially expressed between tumor front and the inner tumor. Several genes were validated by immunohistochemistry. Evaluation of the microRNA data revealed zonal expression differences in nearly a fourth of the microRNAs analyzed. Validation of selected microRNAs by in situ hybridization demonstrated strong expression of hsa-miR-196a in the inner tumor; moderate expression of hsa-miR-224 in the inner tumor and tumor front, and strong expression of hsa-miR-650 in the adjacent lung tissue. Pathway analysis placed the majority of genes differentially expressed between tumor and nontumor cells in intrinsic processes associated with inflammation and extrinsic processes related to lymphocyte physiology. Genes differentially expressed between the inner tumor and the adjacent lung/normal lung tissue affected pathways of arachidonic acid metabolism and eicosanoid signaling.
Division of Molecular Genetics, German Cancer Research Center, Heidelberg, Germany.
Hui
H
Wu
Daniel
D
Haag
Thomas
T
Muley
Arne
A
Warth
Marc
M
Zapatka
Grischa
G
Toedt
Armin
A
Pscherer
Meinhard
M
Hahn
Ralf J
RJ
Rieker
David L
DL
Wachter
Michael
M
Meister
Philipp
P
Schnabel
Karin
K
Müller-Decker
Michael A
MA
Rogers
Hans
H
Hoffmann
Peter
P
Lichter
D002294:Carcinoma, Squamous Cell / Q000235:genetics* / Q000473:pathology; D016000:Cluster Analysis; D020869:Gene Expression Profiling; D015972:Gene Expression Regulation, Neoplastic; D006801:Humans; D008175:Lung Neoplasms / Q000235:genetics* / Q000473:pathology; D035683:MicroRNAs / Q000235:genetics; D015203:Reproducibility of Results; D059467:Transcriptome; D059016:Tumor Microenvironment / Q000235:genetics*
D035683:MicroRNAs