NSort/DB: an intranuclear compartment protein database.
Distinct substructures within the nucleus are associated with a wide variety of important nuclear processes. Structures such as chromatin and nuclear pores have specific roles, while others such as Cajal bodies are more functionally varied. Understanding the roles of these membraneless intra-nuclear compartments requires extensive data sets covering nuclear and compartment-associated proteins. NSort/DB is a database providing access to intra- or sub-nuclear compartment associations for the mouse nuclear proteome. Based on resources ranging from large-scale curated data sets to detailed experiments, this data set provides a high-quality set of annotations of non-exclusive association of nuclear proteins with structures such as promyelocytic leukaemia bodies and chromatin. The database is searchable by protein identifier or compartment, and has a documented web service API. The search interface, web service and data download are all freely available online at http://www.nsort.org/db/. Availability of this data set will enable systematic analyses of the protein complements of nuclear compartments, improving our understanding of the diverse functional repertoire of these structures.
School of Chemistry and Molecular Biosciences, The University of Queensland, St. Lucia, Australia. willadsen@uq.edu.au
Kai
K
Willadsen
Nurul
N
Mohamad
Mikael
M
Bodén
D000818:Animals; D022003:Cell Nucleus Structures / Q000737:chemistry*; D002843:Chromatin / Q000737:chemistry*; D020541:Coiled Bodies / Q000737:chemistry; D030562:Databases, Protein; D051379:Mice; D009687:Nuclear Proteins / Q000032:analysis*; D020543:Proteome / Q000032:analysis*; D012984:Software
D002843:Chromatin; D009687:Nuclear Proteins; D020543:Proteome