Modeling Drosophila positional preferences in open field arenas with directional persistence and wall attraction.
In open field arenas, Drosophila adults exhibit a preference for arena boundaries over internal walls and open regions. Herein, we investigate the nature of this preference using phenomenological modeling of locomotion to determine whether local arena features and constraints on movement alone are sufficient to drive positional preferences within open field arenas of different shapes and with different internal features. Our model has two components: directional persistence and local wall force. In regions far away from walls, the trajectory is entirely characterized by a directional persistence probability, P(r,θ), for each movement defined by the step size, r, and the turn angle, θ. In close proximity to walls, motion is computed from P(r,θ), and a local attractive force which depends on the distance between the fly and points on the walls. The directional persistence probability was obtained experimentally from trajectories of wild type Drosophila in a circular open field arena and the wall force was computed to minimize the difference between the radial distributions from the model and Drosophila in the same circular arena. The two-component model for fly movement was challenged by comparing the positional preferences from the two-component model to wild type Drosophila in a variety of open field arenas. In most arenas there was a strong concordance between the two-component model and Drosophila. In more complex arenas, the model exhibits similar trends, but some significant differences were found. These differences suggest that there are emergent features within these complex arenas that have significance for the fly, such as potential shelter. Hence, the two-component model is an important step in defining how Drosophila interact with their environment.
Department of Computer Science, University of Houston, Houston, Texas, United States of America.
Benjamin
B
Soibam
Rachel L
RL
Goldfeder
Claire
C
Manson-Bishop
Rachel
R
Gamblin
Scott D
SD
Pletcher
Shishir
S
Shah
Gemunu H
GH
Gunaratne
Gregg W
GW
Roman
D000465:Algorithms; D063147:Animal Distribution; D000818:Animals; D003198:Computer Simulation; D029721:Drosophila Proteins / Q000235:genetics; D004331:Drosophila melanogaster / Q000235:genetics / Q000502:physiology*; D005838:Genotype; D008124:Locomotion; D008954:Models, Biological; D015233:Models, Statistical; D009154:Mutation; D017711:Nonlinear Dynamics
D029721:Drosophila Proteins