title: Vitamin D receptor gene polymorphisms and haplotypes (Apa I, Bsm I, Fok I, Taq I) in Turkish psoriasis patients.
abstract: BACKGROUND
  Psoriasis is an inflammatory disease characterized by increased squamous cell proliferation and impaired differentiation. Vitamin D, Calcitriol, and its analogues are successfully used for psoriasis therapy. However, it is unknown why some psoriasis patients are resistant to Vitamin D therapy. Vitamin D mediates its activity by a nuclear receptor. It is suggested that polymorphisms and haplotypes in the VDR gene may explain the differences in response to vitamin D therapy.
  
  
  METHODS
  In this study, 102 psoriasis patients and 102 healthy controls were studied for VDR gene polymorphisms. The Fok I, Bsm I, Apa I and Taq I polymorphisms were examined by PCR-RFLP, and 50 subjects received vitamin D therapy to evaluate the association between VDR gene polymorphisms and response to vitamin D therapy. Existence of cutting site is shown by capital letters, and lack was shown by lower case. The haplotypes were analysed by CHAPLIN.
  
  
  RESULTS
  There was significant difference in allele frequency of T and genotype frequency of Tt between cases and controls (p values 0.038 and 0.04, respectively). The Aa and bb genotypes were significantly higher in early onset than late onset psoriasis (p values 0.008 and 0.04, respectively). The genotypes Ff, ff and TT are significantly different between vitamin D3 therapy responders and non-responders (p values 0.04, 0.0001, 0.009, respectively). To the best of our knowledge, this is the first report showing importance of VDR gene haplotypes in psoriasis, the significance of the Wald and LR (Likelihood Ratio) statistics (p=0,0042) suggest that FfBbAatt is a disease-susceptibility haplotype.
  
  
  CONCLUSIONS
  Haplotype analysis is a recent and commonly used method in genetic association studies. Our results reveal a previously unidentified susceptibility haplotype and indicate that certain haplotypes are important in the resistance to vitamin D3 therapy and the onset of psoriasis. The haplotypes can give valuable data where genotypes unable to do.
authors.affiliation: Department of Medical Biology, Faculty of Medicine, Pamukkale University, Denizli, Turkey. iacikbas@pamukkale.edu.tr
authors.forename: Ibrahim
authors.initials: I
authors.lastname: Acikbas
authors.forename: Berna
authors.initials: B
authors.lastname: Sanlı
authors.forename: Emre
authors.initials: E
authors.lastname: Tepeli
authors.forename: Seniz
authors.initials: S
authors.lastname: Ergin
authors.forename: Sebnem
authors.initials: S
authors.lastname: Aktan
authors.forename: Huseyin
authors.initials: H
authors.lastname: Bagci
mesh_terms: D000328:Adult; D000368:Aged; D002648:Child; D004262:DNA Restriction Enzymes; D005260:Female; D020022:Genetic Predisposition to Disease; D006239:Haplotypes / Q000235:genetics*; D006801:Humans; D008297:Male; D008875:Middle Aged; D011110:Polymorphism, Genetic; D011565:Psoriasis / Q000235:genetics*; D018167:Receptors, Calcitriol / Q000235:genetics*; D014421:Turkey; D055815:Young Adult
chemical_list: D018167:Receptors, Calcitriol; C579457:VDR protein, human; D004262:DNA Restriction Enzymes