title: Recognition of two major clades and early diverged groups within the subfamily Cyperoideae (Cyperaceae) including Korean sedges.
abstract: We aim to present phylogenetic major groups within the subfamily Cyperoideae (Cyperaceae) on the basis of three molecular data sets; nuclear ribosomal internal transcribed spacer and 5.8S ribosomal RNA region, the ribulose-1, 5-bisphosphate carboxylase/oxygenase large subunit gene, and trnL intron and trnL-F intergenic spacer. Three molecular data and two combined data sets were used to obtain robust and detailed phylogenetic trees by using maximum parsimony and Bayesian inference, respectively. We analyzed 81 genera and 426 species of Cyperaceae, including Korean species. We suggest one early diverged group (EDGs), and two major clades (FAEC and SDC) within the subfamily Cyperoideae. And the clade EDGs comprises six tribes (Schoeneae, Bisboeckelereae, Sclerieae, Cryptangieae, Trilepideae, and Rhynchosporeae) at the basal nodes of Cyperoideae. The FAEC clade (posterior probability [PP]/bootstrap value [BS] = 1.00/85) comprises four tribes (Fuireneae, Abildgaardieae, Eleocharideae, Cypereae), and the SDC clade (PP/BS = 1.00/86) comprises three tribes (Scirpeae, Dulichieae, Cariceae). These three clades used for phylogenetic groups in our study will be useful for establishing the major lineage of the sedge family. The phylogeny of Korean sedges was also investigated within the whole phylogeny of Cyperaceae. The 20 genera of Korean sedges were placed in 10 tribes forming 14 clades.
authors.affiliation: Department of Biological Science, Ajou University, Woncheon-dong, Yeongtong-gu, Suwon, South Korea.
authors.forename: Jongduk
authors.initials: J
authors.lastname: Jung
authors.forename: Hong-Keun
authors.initials: HK
authors.lastname: Choi
mesh_terms: D029785:Cyperaceae / Q000145:classification* / Q000235:genetics*; D021901:DNA, Intergenic / Q000235:genetics; D018744:DNA, Plant / Q000235:genetics; D007723:Korea; D008969:Molecular Sequence Data; D010802:Phylogeny; D010940:Plant Proteins / Q000235:genetics; D016133:Polymerase Chain Reaction; D018749:RNA, Plant / Q000235:genetics; D012340:RNA, Ribosomal, 5.8S / Q000235:genetics; D012356:RNA, Transfer, Leu / Q000235:genetics; D012273:Ribulose-Bisphosphate Carboxylase / Q000235:genetics; D017422:Sequence Analysis, DNA; D017385:Sequence Homology
chemical_list: D021901:DNA, Intergenic; D018744:DNA, Plant; D010940:Plant Proteins; D018749:RNA, Plant; D012340:RNA, Ribosomal, 5.8S; D012356:RNA, Transfer, Leu; D012273:Ribulose-Bisphosphate Carboxylase