title: Metabolically active microbial communities in marine sediment under high-CO(2) and low-pH extremes.
abstract: Sediment-hosting hydrothermal systems in the Okinawa Trough maintain a large amount of liquid, supercritical and hydrate phases of CO(2) in the seabed. The emission of CO(2) may critically impact the geochemical, geophysical and ecological characteristics of the deep-sea sedimentary environment. So far it remains unclear whether microbial communities that have been detected in such high-CO(2) and low-pH habitats are metabolically active, and if so, what the biogeochemical and ecological consequences for the environment are. In this study, RNA-based molecular approaches and radioactive tracer-based respiration rate assays were combined to study the density, diversity and metabolic activity of microbial communities in CO(2)-seep sediment at the Yonaguni Knoll IV hydrothermal field of the southern Okinawa Trough. In general, the number of microbes decreased sharply with increasing sediment depth and CO(2) concentration. Phylogenetic analyses of community structure using reverse-transcribed 16S ribosomal RNA showed that the active microbial community became less diverse with increasing sediment depth and CO(2) concentration, indicating that microbial activity and community structure are sensitive to CO(2) venting. Analyses of RNA-based pyrosequences and catalyzed reporter deposition-fluorescence in situ hybridization data revealed that members of the SEEP-SRB2 group within the Deltaproteobacteria and anaerobic methanotrophic archaea (ANME-2a and -2c) were confined to the top seafloor, and active archaea were not detected in deeper sediments (13-30 cm in depth) characterized by high CO(2). Measurement of the potential sulfate reduction rate at pH conditions of 3-9 with and without methane in the headspace indicated that acidophilic sulfate reduction possibly occurs in the presence of methane, even at very low pH of 3. These results suggest that some members of the anaerobic methanotrophs and sulfate reducers can adapt to the CO(2)-seep sedimentary environment; however, CO(2) and pH in the deep-sea sediment were found to severely impact the activity and structure of the microbial community.
authors.affiliation: Department of Earth and Planetary Science, Graduate School of Science, University of Tokyo, Tokyo, Japan.
authors.forename: Katsunori
authors.initials: K
authors.lastname: Yanagawa
authors.forename: Yuki
authors.initials: Y
authors.lastname: Morono
authors.forename: Dirk
authors.initials: D
authors.lastname: de Beer
authors.forename: Matthias
authors.initials: M
authors.lastname: Haeckel
authors.forename: Michinari
authors.initials: M
authors.lastname: Sunamura
authors.forename: Taiki
authors.initials: T
authors.lastname: Futagami
authors.forename: Tatsuhiko
authors.initials: T
authors.lastname: Hoshino
authors.forename: Takeshi
authors.initials: T
authors.lastname: Terada
authors.forename: Ko-Ichi
authors.initials: K
authors.lastname: Nakamura
authors.forename: Tetsuro
authors.initials: T
authors.lastname: Urabe
authors.forename: Gregor
authors.initials: G
authors.lastname: Rehder
authors.forename: Antje
authors.initials: A
authors.lastname: Boetius
authors.forename: Fumio
authors.initials: F
authors.lastname: Inagaki
mesh_terms: D001105:Archaea / Q000145:classification / Q000235:genetics / Q000378:metabolism / Q000502:physiology*; D001419:Bacteria / Q000145:classification / Q000235:genetics / Q000378:metabolism; D058491:Bacterial Load; D018407:Bacterial Physiological Phenomena; D044822:Biodiversity; D002245:Carbon Dioxide / Q000032:analysis / Q000737:chemistry; D004777:Environment; D019015:Geologic Sediments / Q000737:chemistry* / Q000382:microbiology*; D006863:Hydrogen-Ion Concentration; D008697:Methane / Q000378:metabolism; D010802:Phylogeny; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D013431:Sulfates / Q000378:metabolism; D013696:Temperature
chemical_list: D012336:RNA, Ribosomal, 16S; D013431:Sulfates; D002245:Carbon Dioxide; D008697:Methane