title: Pedimap: software for the visualization of genetic and phenotypic data in pedigrees.
abstract: Pedimap is a user-friendly software tool for visualizing phenotypic and genotypic data for related individuals linked in pedigrees. Genetic data can include marker scores, Identity-by-Descent probabilities, and marker linkage map positions, allowing the visualization of haplotypes through lineages. The pedigrees can accommodate all types of inheritance, including selfing, cloning, and repeated backcrossing, and all ploidy levels are supported. Visual association of the genetic data with phenotypic data simplifies the exploration of large data sets, thereby improving breeding decision making. Data are imported from text files; in addition data exchange with other software packages (FlexQTL(TM) and GenomeStudio(TM)) is possible. Instructions for use and an executable version compatible with the Windows platform are available for free from http://www.plantbreeding.wur.nl/UK/software_pedimap.html.
authors.affiliation: Wageningen University & Research Centre, Plant Breeding, PO Box 16, 6700 AA Wageningen, The Netherlands. roeland.voorrips@wur.nl
authors.forename: Roeland E
authors.initials: RE
authors.lastname: Voorrips
authors.forename: Marco C A M
authors.initials: MC
authors.lastname: Bink
authors.forename: W Eric
authors.initials: WE
authors.lastname: van de Weg
mesh_terms: D003433:Crosses, Genetic; D008040:Genetic Linkage; D005819:Genetic Markers; D027845:Malus / Q000235:genetics; D010375:Pedigree; D010641:Phenotype; D010944:Plants / Q000235:genetics*; D011123:Polyploidy; D012984:Software; D014584:User-Computer Interface
chemical_list: D005819:Genetic Markers