title: Identification of wild soybean (Glycine soja) TIFY family genes and their expression profiling analysis under bicarbonate stress.
abstract: Wild soybean (Glycine soja L. G07256) exhibits a greater adaptability to soil bicarbonate stress than cultivated soybean, and recent discoveries show that TIFY family genes are involved in the response to several abiotic stresses. A genomic and transcriptomic analysis of all TIFY genes in G. soja, compared with G. max, will provide insight into the function of this gene family in plant bicarbonate stress response. This article identified and characterized 34 TIFY genes in G. soja. Sequence analyses indicated that most GsTIFY proteins had two conserved domains: TIFY and Jas. Phylogenetic analyses suggested that these GsTIFY genes could be classified into two groups. A clustering analysis of all GsTIFY transcript expression profiles from bicarbonate stress treated G. soja showed that there were five different transcript patterns in leaves and six different transcript patterns in roots when the GsTIFY family responds to bicarbonate stress. Moreover, the expression level changes of all TIFY genes in cultivated soybean, treated with bicarbonate stress, were also verified. The expression comparison analysis of TIFYs between wild and cultivated soybeans confirmed that, different from the cultivated soybean, GsTIFY (10a, 10b, 10c, 10d, 10e, 10f, 11a, and 11b) were dramatically up-regulated at the early stage of stress, while GsTIFY 1c and 2b were significantly up-regulated at the later period of stress. The frequently stress responsive and diverse expression profiles of the GsTIFY gene family suggests that this family may play important roles in plant environmental stress responses and adaptation.
authors.affiliation: Plant Bioengineering Laboratory, The College of Life Sciences, Northeast Agricultural University, Harbin 150030, China. zhudan2010dora@yahoo.cn
authors.forename: Dan
authors.initials: D
authors.lastname: Zhu
authors.forename: Xi
authors.initials: X
authors.lastname: Bai
authors.forename: Xiao
authors.initials: X
authors.lastname: Luo
authors.forename: Qin
authors.initials: Q
authors.lastname: Chen
authors.forename: Hua
authors.initials: H
authors.lastname: Cai
authors.forename: Wei
authors.initials: W
authors.lastname: Ji
authors.forename: Yanming
authors.initials: Y
authors.lastname: Zhu
mesh_terms: D001639:Bicarbonates / Q000494:pharmacology*; D016000:Cluster Analysis; D020869:Gene Expression Profiling; D018506:Gene Expression Regulation, Plant; D018745:Genome, Plant / Q000235:genetics*; D005810:Multigene Family; D020411:Oligonucleotide Array Sequence Analysis; D010802:Phylogeny; D018515:Plant Leaves / Q000187:drug effects / Q000235:genetics / Q000502:physiology; D010940:Plant Proteins / Q000145:classification / Q000235:genetics*; D018517:Plant Roots / Q000187:drug effects / Q000235:genetics / Q000502:physiology; D017434:Protein Structure, Tertiary; D017422:Sequence Analysis, DNA; D013025:Glycine max / Q000187:drug effects / Q000235:genetics* / Q000502:physiology; D013045:Species Specificity; D013312:Stress, Physiological; D059467:Transcriptome; D015854:Up-Regulation
chemical_list: D001639:Bicarbonates; D010940:Plant Proteins