title: Optimal number of samples to test for institutional respiratory infection outbreaks in Ontario.
abstract: The objective of this study was to determine the optimal number of respiratory samples per outbreak to be tested for institutional respiratory outbreaks in Ontario. We reviewed respiratory samples tested for respiratory viruses by multiplex PCR as part of outbreak investigations. We documented outbreaks that were positive for any respiratory viruses and for influenza alone. At least one virus was detected in 1454 (85∙2%) outbreaks. The ability to detect influenza or any respiratory virus increased as the number of samples tested increased. When analysed by chronological order of when samples were received at the laboratory, percent positivity of outbreaks testing positive for any respiratory virus including influenza increased with the number of samples tested up to the ninth sample, with minimal benefit beyond the fourth sample tested. Testing up to four respiratory samples per outbreak was sufficient to detect viral organisms and resulted in significant savings for outbreak investigations.
authors.affiliation: Public Health Ontario, Toronto, ON, Canada. adriana.peci@oahpp.ca
authors.forename: A
authors.initials: A
authors.lastname: Peci
authors.forename: A
authors.initials: A
authors.lastname: Marchand-Austin
authors.forename: A-L
authors.initials: AL
authors.lastname: Winter
authors.forename: A-J
authors.initials: AJ
authors.lastname: Winter
authors.forename: J B
authors.initials: JB
authors.lastname: Gubbay
mesh_terms: D000368:Aged; D000369:Aged, 80 and over; D002648:Child; D004196:Disease Outbreaks / Q000706:statistics & numerical data*; D006801:Humans; D007231:Infant, Newborn; D007251:Influenza, Human / Q000453:epidemiology / Q000821:virology; D060885:Multiplex Polymerase Chain Reaction / Q000191:economics / Q000379:methods*; D009864:Ontario / Q000453:epidemiology; D012141:Respiratory Tract Infections / Q000453:epidemiology* / Q000821:virology*; D012494:Sampling Studies