title: Pushing short DNA fragments to the limit: Phylogenetic relationships of 'hydrobioid' gastropods (Caenogastropoda: Rissooidea).
abstract: Although phylogenetic studies are increasingly utilizing multi-locus datasets, a review of GenBank data for the Gastropoda indicates a strong bias towards a few short gene fragments (most commonly COI, LSU rRNA, and SSU rRNA). This is particularly the case for the Rissooidea, one of the largest and most taxonomically difficult gastropod superfamilies. Here we analyze fragments of these three genes from 90 species to determine whether they can well resolve higher relationships within this superfamily, whether structurally aligned sequence datasets increase phylogenetic signal, and whether the inclusion of highly variable regions introduces noise. We also used the resulting phylogenetic data in combination with morphological/anatomical evidence to re-evaluate the taxonomic status of 'hydrobioid' family-level groups. Our results indicate that all three of the alignment strategies that were used resulted in phylogenies having similar signal levels. However, there was a slight advantage to using structural alignment for inferring family-level relationships. Moreover, the set of 'standard' gastropod genes supported recognition of many previously recognized families and provides new insight into the systematics of several problematic groups. However, some family-group taxa were unresolved and the relationships among families were also poorly supported, suggesting a need for more extensive sampling and inclusion of additional genes.
authors.affiliation: Justus Liebig University Giessen, Department of Animal Ecology and Systematics, Heinrich-Buff-Ring 26-32 (IFZ), D-35392 Giessen, Germany. tom.wilke@allzool.bio.uni-giessen.de
authors.forename: Thomas
authors.initials: T
authors.lastname: Wilke
authors.forename: Martin
authors.initials: M
authors.lastname: Haase
authors.forename: Robert
authors.initials: R
authors.lastname: Hershler
authors.forename: Hsiu-Ping
authors.initials: HP
authors.lastname: Liu
authors.forename: Bernhard
authors.initials: B
authors.lastname: Misof
authors.forename: Winston
authors.initials: W
authors.lastname: Ponder
mesh_terms: D000818:Animals; D001483:Base Sequence; D001499:Bayes Theorem; D053938:DNA Fragmentation; D019143:Evolution, Molecular; D049851:Gastropoda / Q000033:anatomy & histology / Q000145:classification / Q000235:genetics*; D008957:Models, Genetic; D008969:Molecular Sequence Data; D010802:Phylogeny; D016415:Sequence Alignment; D017422:Sequence Analysis, DNA / Q000379:methods*