title: Spectral algorithms for heterogeneous biological networks.
abstract: Spectral methods, which use information relating to eigenvectors, singular vectors and generalized singular vectors, help us to visualize and summarize sets of pairwise interactions. In this work, we motivate and discuss the use of spectral methods by taking a matrix computation view and applying concepts from applied linear algebra. We show that this unified approach is sufficiently flexible to allow multiple sources of network information to be combined. We illustrate the methods on microarray data arising from a large population-based study in human adipose tissue, combined with related information concerning metabolic pathways.
authors.affiliation: Department of Mathematics and Statistics, University of Strathclyde, Glasgow G1 1XH, UK.
authors.forename: Martin
authors.initials: M
authors.lastname: McDonald
authors.forename: Desmond J
authors.initials: DJ
authors.lastname: Higham
authors.forename: J Keith
authors.initials: JK
authors.lastname: Vass
mesh_terms: D000465:Algorithms; D000818:Animals; D019295:Computational Biology / Q000379:methods*; D006801:Humans; D053858:Metabolic Networks and Pathways