title: Heterozygosity assessment of five STR loci located at 5q13 region for preimplantation genetic diagnosis of spinal muscular atrophy.
abstract: Preimplantation genetic diagnosis (PGD) has been considered as an alternative to prenatal diagnosis for prevention of genetic disorders while avoiding the subsequent termination of pregnancy. However, the limited amount of template DNA available in a single diploid cell used for PGD leads to number of problems including an increased incidence of detectable contamination; amplification failure and allele drop out. Due to their highly polymorphic and amplifiable characteristics, short tandem repeat (STR) analysis has been proposed as a mean to overcome these limitations. Heterozygosity of the applied STRs is of paramount importance in their informativity, and should therefore be studied in any certain population. Here, for the first time, we report on the heterozygosity analysis of five STR markers (D5S1408, D5S1417, D5S610, D5S629 and D5S637) flanking to SMA gene region, to examine their applicability in the PGD for SMA disease. We have also investigated other statistical features of these markers and found that all of the five studied STRs were informative and four meet the Hardy-Weinberg equilibrium for the studied population. Furthermore, our results propose that similar approaches can be used for the PGD of other single gene disorders.
authors.affiliation: Department of Medical Genetics, Tehran University of Medical Sciences, 21, Shabahang Building, 26, Dr Gharib Street, Keshavarz Blvd, 1419783517 Tehran, Iran.
authors.forename: Asghar
authors.initials: A
authors.lastname: Korzebor
authors.forename: Pupak
authors.initials: P
authors.lastname: Derakhshandeh-Peykar
authors.forename: Mohsen
authors.initials: M
authors.lastname: Meshkani
authors.forename: Azadeh
authors.initials: A
authors.lastname: Hoseini
authors.forename: Maryam
authors.initials: M
authors.lastname: Rafati
authors.forename: Marzieh
authors.initials: M
authors.lastname: Purhoseini
authors.forename: Saeed Reza
authors.initials: SR
authors.lastname: Ghaffari
mesh_terms: D000483:Alleles; D002895:Chromosomes, Human, Pair 5; D005787:Gene Frequency; D023061:Gene Order; D006579:Heterozygote; D006801:Humans; D018895:Microsatellite Repeats; D009134:Muscular Atrophy, Spinal / Q000175:diagnosis* / Q000235:genetics*; D019836:Preimplantation Diagnosis