title: DOOSS: a tool for visual analysis of data overlaid on secondary structures.
abstract: BACKGROUND
  DOOSS (Data Overlaid On Secondary Structures) is a tool for visualizing annotated secondary structures of large single-stranded nucleotide sequences (such as full-length virus genomes). The purpose of this tool is to assist investigators in evaluating the biological relevance of secondary structures within particular sequences.
  
  
  METHODS
  DOOSS is written in Java and is available from: http://dooss.computingforbiology.org
  
  
  BACKGROUND
  michaelgolden0@gmail.com
  
  
  BACKGROUND
  Supplementary data are available at Bioinformatics online.
authors.affiliation: Computational Biology Group, Institute of Infectious Diseases and Molecular Medicine, University of Cape Town, Cape Town 4579, South Africa. michaelgolden0@gmail.com
authors.forename: Michael
authors.initials: M
authors.lastname: Golden
authors.forename: Darren
authors.initials: D
authors.lastname: Martin
mesh_terms: D001483:Base Sequence; D003196:Computer Graphics; D016679:Genome, Viral; D015497:HIV-1 / Q000235:genetics; D006801:Humans; D009690:Nucleic Acid Conformation; D012984:Software