title: ENCODE data in the UCSC Genome Browser: year 5 update.
abstract: The Encyclopedia of DNA Elements (ENCODE), http://encodeproject.org, has completed its fifth year of scientific collaboration to create a comprehensive catalog of functional elements in the human genome, and its third year of investigations in the mouse genome. Since the last report in this journal, the ENCODE human data repertoire has grown by 898 new experiments (totaling 2886), accompanied by a major integrative analysis. In the mouse genome, results from 404 new experiments became available this year, increasing the total to 583, collected during the course of the project. The University of California, Santa Cruz, makes this data available on the public Genome Browser http://genome.ucsc.edu for visual browsing and data mining. Download of raw and processed data files are all supported. The ENCODE portal provides specialized tools and information about the ENCODE data sets.
authors.affiliation: Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064, USA. kate@soe.ucsc.edu
authors.forename: Kate R
authors.initials: KR
authors.lastname: Rosenbloom
authors.forename: Cricket A
authors.initials: CA
authors.lastname: Sloan
authors.forename: Venkat S
authors.initials: VS
authors.lastname: Malladi
authors.forename: Timothy R
authors.initials: TR
authors.lastname: Dreszer
authors.forename: Katrina
authors.initials: K
authors.lastname: Learned
authors.forename: Vanessa M
authors.initials: VM
authors.lastname: Kirkup
authors.forename: Matthew C
authors.initials: MC
authors.lastname: Wong
authors.forename: Morgan
authors.initials: M
authors.lastname: Maddren
authors.forename: Ruihua
authors.initials: R
authors.lastname: Fang
authors.forename: Steven G
authors.initials: SG
authors.lastname: Heitner
authors.forename: Brian T
authors.initials: BT
authors.lastname: Lee
authors.forename: Galt P
authors.initials: GP
authors.lastname: Barber
authors.forename: Rachel A
authors.initials: RA
authors.lastname: Harte
authors.forename: Mark
authors.initials: M
authors.lastname: Diekhans
authors.forename: Jeffrey C
authors.initials: JC
authors.lastname: Long
authors.forename: Steven P
authors.initials: SP
authors.lastname: Wilder
authors.forename: Ann S
authors.initials: AS
authors.lastname: Zweig
authors.forename: Donna
authors.initials: D
authors.lastname: Karolchik
authors.forename: Robert M
authors.initials: RM
authors.lastname: Kuhn
authors.forename: David
authors.initials: D
authors.lastname: Haussler
authors.forename: W James
authors.initials: WJ
authors.lastname: Kent
mesh_terms: D000818:Animals; D030541:Databases, Genetic; D015894:Genome, Human; D023281:Genomics; D006801:Humans; D020407:Internet; D051379:Mice; D012984:Software