title: Ecology and physics of bacterial chemotaxis in the ocean.
abstract: Intuitively, it may seem that from the perspective of an individual bacterium the ocean is a vast, dilute, and largely homogeneous environment. Microbial oceanographers have typically considered the ocean from this point of view. In reality, marine bacteria inhabit a chemical seascape that is highly heterogeneous down to the microscale, owing to ubiquitous nutrient patches, plumes, and gradients. Exudation and excretion of dissolved matter by larger organisms, lysis events, particles, animal surfaces, and fluxes from the sediment-water interface all contribute to create strong and pervasive heterogeneity, where chemotaxis may provide a significant fitness advantage to bacteria. The dynamic nature of the ocean imposes strong selective pressures on bacterial foraging strategies, and many marine bacteria indeed display adaptations that characterize their chemotactic motility as "high performance" compared to that of enteric model organisms. Fast swimming speeds, strongly directional responses, and effective turning and steering strategies ensure that marine bacteria can successfully use chemotaxis to very rapidly respond to chemical gradients in the ocean. These fast responses are advantageous in a broad range of ecological processes, including attaching to particles, exploiting particle plumes, retaining position close to phytoplankton cells, colonizing host animals, and hovering at a preferred height above the sediment-water interface. At larger scales, these responses can impact ocean biogeochemistry by increasing the rates of chemical transformation, influencing the flux of sinking material, and potentially altering the balance of biomass incorporation versus respiration. This review highlights the physical and ecological processes underpinning bacterial motility and chemotaxis in the ocean, describes the current state of knowledge of chemotaxis in marine bacteria, and summarizes our understanding of how these microscale dynamics scale up to affect ecosystem-scale processes in the sea.
authors.affiliation: Ralph M. Parsons Laboratory, Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA. romans@mit.edu
authors.forename: Roman
authors.initials: R
authors.lastname: Stocker
authors.forename: Justin R
authors.initials: JR
authors.lastname: Seymour
mesh_terms: D000222:Adaptation, Physiological; D018407:Bacterial Physiological Phenomena; D002244:Carbon / Q000378:metabolism; D002633:Chemotaxis / Q000502:physiology*; D017753:Ecosystem; D009584:Nitrogen / Q000378:metabolism; D009792:Oceans and Seas; D010839:Phytoplankton / Q000382:microbiology; D012623:Seawater / Q000382:microbiology*; D013455:Sulfur / Q000378:metabolism
chemical_list: D013455:Sulfur; D002244:Carbon; D009584:Nitrogen