title: Developing a taxonomic identification system of Phytophthora species based on microsatellites.
abstract: BACKGROUND
  Phytophthora is the most important genus of the Oomycete plant pathogens. Nowadays, there are 117 described species in this genus, most of them being primary invaders of plant tissues. The different species are causal agents of diseases in a wide range of crops and plants in natural environments. In order to develop control strategies against Phytophthoraspecies, it is important to know the biology, ecology and evolutionary processes of these important pathogens.
  
  
  OBJECTIVE
  The aim of this study was to propose and validate a low cost identification system for Phytophthora species based on a set of polymorphic microsatellite (SSRs) markers.
  
  
  METHODS
  Thirty-three isolates representing Phytophthora infestans, Phytophthora andina, Phytophthora sojae, Phytophthora cryptogea, Phytophthora nicotianae, Phytophthora capsici and Phytophthora cinnamomi species were obtained, and 13 SSRs were selected as potentially transferable markers between these species. Amplification conditions, including annealing temperatures, were standardized for several markers.
  
  
  RESULTS
  A subset of these markers amplified in all species, showing species-specific alleles.
  
  
  CONCLUSIONS
  The adaptability and impact of the identification system in Colombia, an Andean agricultural country where different Phytophthora species co-exist in the same or in several hosts grown together, are discussed.
authors.affiliation: Laboratorio de Micología y Fitopatología, Departamento de Ciencias Biológicas, Universidad de Los Andes, Bogotá D.C., Colombia.
authors.forename: Johanna
authors.initials: J
authors.lastname: del Castillo-Múnera
authors.forename: Martha
authors.initials: M
authors.lastname: Cárdenas
authors.forename: Andrés
authors.initials: A
authors.lastname: Pinzón
authors.forename: Adriana
authors.initials: A
authors.lastname: Castañeda
authors.forename: Adriana J
authors.initials: AJ
authors.lastname: Bernal
authors.forename: Silvia
authors.initials: S
authors.lastname: Restrepo
mesh_terms: D000483:Alleles; D003105:Colombia; D004247:DNA / Q000235:genetics*; D005838:Genotype; D018895:Microsatellite Repeats; D010802:Phylogeny; D010838:Phytophthora / Q000145:classification* / Q000235:genetics; D011110:Polymorphism, Genetic; D016415:Sequence Alignment; D013045:Species Specificity
chemical_list: D004247:DNA