title: Common variant in FUT2 gene is associated with levels of vitamin B(12) in Indian population.
abstract: Vitamin B(12) is an essential micronutrient synthesized by microorganisms. Mammals including humans have evolved ways for transport and absorption of this vitamin. Deficiency of vitamin B(12) (either due to low intake or polymorphism in genes involved in absorption and intracellular transport of this vitamin) has been associated with various complex diseases. Genome-wide association studies have recently identified several common single nucleotide polymorphisms (SNPs) in fucosyl transferase 2 gene (FUT2) to be associated with levels of vitamin B(12)-the strongest association was with a non-synonymous SNP rs602662 in this gene. In the present study, we attempted to replicate the association of this SNP (rs602662) in an Indian population since a significant proportion has been reported to have low levels of vitamin B(12) in this population. A total of 1146 individuals were genotyped for this SNP using a single base extension method and association with levels of vitamin B(12) was assessed in these individuals. Regression analysis was performed to analyze the association considering various confounding factors like for age, sex, diet, hypertension, diabetes mellitus and coronary artery disease status. We found that the SNP rs602662 was significantly associated with the levels of vitamin B(12) (p value<0.0001). We also found that individuals adhering to a vegetarian diet with GG (homozygous major genotype) have significantly lower levels of vitamin B(12) in these individuals. Thus, our study reveals that vegetarian diet along with polymorphism in the FUT2 gene may contribute significantly to the high prevalence of vitamin B(12) deficiency in India.
authors.affiliation: Genomics and Molecular Medicine, CSIR-Institute of Genomics and Integrative Biology (CSIR-IGIB), Delhi-110007, India. vinay.singh@igib.in
authors.forename: Vinay Singh
authors.initials: VS
authors.lastname: Tanwar
authors.forename: Mandeep P
authors.initials: MP
authors.lastname: Chand
authors.forename: Jitender
authors.initials: J
authors.lastname: Kumar
authors.forename: Gaurav
authors.initials: G
authors.lastname: Garg
authors.forename: Sandeep
authors.initials: S
authors.lastname: Seth
authors.forename: Ganesan
authors.initials: G
authors.lastname: Karthikeyan
authors.forename: Shantanu
authors.initials: S
authors.lastname: Sengupta
mesh_terms: D000328:Adult; D000483:Alleles; D056726:Genetic Association Studies; D005838:Genotype; D006801:Humans; D007194:India; D008875:Middle Aged; D020641:Polymorphism, Single Nucleotide; D011062:Polynucleotide Adenylyltransferase / Q000235:genetics*; D014805:Vitamin B 12 / Q000097:blood / Q000378:metabolism*; D044465:White People / Q000235:genetics*; D039221:mRNA Cleavage and Polyadenylation Factors
chemical_list: D039221:mRNA Cleavage and Polyadenylation Factors; D011062:Polynucleotide Adenylyltransferase; C550174:TENT2 protein, human; D014805:Vitamin B 12