title: Visual detection of white spot syndrome virus using DNA-functionalized gold nanoparticles as probes combined with loop-mediated isothermal amplification.
abstract: The integration of loop-mediated isothermal amplification (LAMP) and DNA-functionalized AuNPs as visual detection probes (LAMP-AuNPs) was developed and applied for the detection of white spot syndrome virus (WSSV) from Penaeid shrimp in this study. The principle of this combination assay relies on the basis of stability characteristics of the DNA-functionalized AuNPs upon hybridization with the complementary target DNA toward salt-induced aggregation. If the detected target DNA is not complementary to the ssDNA probes, the DNA-functionalized AuNPs will be aggregated due to the screening effect of salt, resulting in the change of solution color from red to blue/gray and shift of the surface plasmon peak to longer wavelength. While the DNA-functionalized AuNPs are perfectly matched to the detected target DNA, the color of solution still remains red in color and no surface plasmon spectral shift. This assay provides simply technique, time-saving and its detection results could be achieved qualitatively and quantitatively by visualization using the naked eye due to the colorimetric change and by measurement using the UV-vis spectroscopy due to the surface plasmon spectral shift, respectively. In this study, LAMP-AuNPs assay was successfully developed with the detection of WSSV-LAMP generated product at 0.03 μg/reaction, and showed the sensitivity of 2 × 10(2) copies WSSV plasmid DNA, that is comparable to the most sensitive method reported to date. The LAMP-AuNPs assay described in this study revealed a highly sensitive, rapid and reliable diagnostic protocol for detection of WSSV. This technique has a potential as a routine method for assessing the infectious diseases in Penaeid shrimp not only for WSSV, but also for other shrimp pathogens, and can be useful tool in field conditions for the diagnosis or surveillance programs.
authors.affiliation: CENTEX Shrimp, Faculty of Science, Mahidol University, Rama 6 Road, Bangkok 10400, Thailand.
authors.forename: Yortyot
authors.initials: Y
authors.lastname: Seetang-Nun
authors.forename: Wansadaj
authors.initials: W
authors.lastname: Jaroenram
authors.forename: Siriporn
authors.initials: S
authors.lastname: Sriurairatana
authors.forename: Rungkarn
authors.initials: R
authors.lastname: Suebsing
authors.forename: Wansika
authors.initials: W
authors.lastname: Kiatpathomchai
mesh_terms: D000818:Animals; D001483:Base Sequence; D003124:Colorimetry / Q000295:instrumentation / Q000379:methods*; D017931:DNA Primers / Q000235:genetics; D006046:Gold; D008969:Molecular Sequence Data; D053758:Nanoparticles; D033561:Penaeidae / Q000821:virology*; D012680:Sensitivity and Specificity; D013696:Temperature; D046848:White spot syndrome virus 1 / Q000235:genetics* / Q000302:isolation & purification
chemical_list: D017931:DNA Primers; D006046:Gold