title: The conformational ensembles of α-synuclein and tau: combining single-molecule FRET and simulations.
abstract: Intrinsically disordered proteins (IDPs) are increasingly recognized for their important roles in a range of biological contexts, both in normal physiological function and in a variety of devastating human diseases. However, their structural characterization by traditional biophysical methods, for the purposes of understanding their function and dysfunction, has proved challenging. Here, we investigate the model IDPs α-Synuclein (αS) and tau, that are involved in major neurodegenerative conditions including Parkinson's and Alzheimer's diseases, using excluded volume Monte Carlo simulations constrained by pairwise distance distributions from single-molecule fluorescence measurements. Using this, to our knowledge, novel approach we find that a relatively small number of intermolecular distance constraints are sufficient to accurately determine the dimensions and polymer conformational statistics of αS and tau in solution. Moreover, this method can detect local changes in αS and tau conformations that correlate with enhanced aggregation. Constrained Monte Carlo simulations produce ensembles that are in excellent agreement both with experimental measurements on αS and tau and with all-atom, explicit solvent molecular dynamics simulations of αS, with much lower configurational sampling requirements and computational expense.
authors.affiliation: Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, USA. abhinav.nath@yale.edu
authors.forename: Abhinav
authors.initials: A
authors.lastname: Nath
authors.forename: Maria
authors.initials: M
authors.lastname: Sammalkorpi
authors.forename: David C
authors.initials: DC
authors.lastname: DeWitt
authors.forename: Adam J
authors.initials: AJ
authors.lastname: Trexler
authors.forename: Shana
authors.initials: S
authors.lastname: Elbaum-Garfinkle
authors.forename: Corey S
authors.initials: CS
authors.lastname: O'Hern
authors.forename: Elizabeth
authors.initials: E
authors.lastname: Rhoades
mesh_terms: D000595:Amino Acid Sequence; D000682:Amyloid / Q000737:chemistry*; D031541:Fluorescence Resonance Energy Transfer; D006801:Humans; D056004:Molecular Dynamics Simulation; D008969:Molecular Sequence Data; D009010:Monte Carlo Method; D011485:Protein Binding; D017434:Protein Structure, Tertiary; D051843:Synucleins / Q000737:chemistry*; D016875:tau Proteins / Q000737:chemistry*
chemical_list: D000682:Amyloid; D051843:Synucleins; D016875:tau Proteins