title: Visualization and analysis of microtubule dynamics using dual color-coded display of plus-end labels.
abstract: Investigating spatial and temporal control of microtubule dynamics in live cells is critical to understanding cell morphogenesis in development and disease. Tracking fluorescently labeled plus-end-tracking proteins over time has become a widely used method to study microtubule assembly. Here, we report a complementary approach that uses only two images of these labels to visualize and analyze microtubule dynamics at any given time. Using a simple color-coding scheme, labeled plus-ends from two sequential images are pseudocolored with different colors and then merged to display color-coded ends. Based on object recognition algorithms, these colored ends can be identified and segregated into dynamic groups corresponding to four events, including growth, rescue, catastrophe, and pause. Further analysis yields not only their spatial distribution throughout the cell but also provides measurements such as growth rate and direction for each labeled end. We have validated the method by comparing our results with ground-truth data derived from manual analysis as well as with data obtained using the tracking method. In addition, we have confirmed color-coded representation of different dynamic events by analyzing their history and fate. Finally, we have demonstrated the use of the method to investigate microtubule assembly in cells and provided guidance in selecting optimal image acquisition conditions. Thus, this simple computer vision method offers a unique and quantitative approach to study spatial regulation of microtubule dynamics in cells.
authors.affiliation: Zilkha Neurogenetic Institute, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA.
authors.forename: Amy K
authors.initials: AK
authors.lastname: Garrison
authors.forename: Mahalakshmi
authors.initials: M
authors.lastname: Shanmugam
authors.forename: Haiwen Connie
authors.initials: HC
authors.lastname: Leung
authors.forename: Caihong
authors.initials: C
authors.lastname: Xia
authors.forename: Zheng
authors.initials: Z
authors.lastname: Wang
authors.forename: Le
authors.initials: L
authors.lastname: Ma
mesh_terms: D000465:Algorithms; D000818:Animals; D019556:COS Cells; D002522:Chlorocebus aethiops; D003116:Color; D005455:Fluorescent Antibody Technique / Q000379:methods*; D017930:Genes, Reporter; D049452:Green Fluorescent Proteins; D007091:Image Processing, Computer-Assisted / Q000295:instrumentation / Q000379:methods*; D008856:Microscopy, Fluorescence / Q000379:methods; D008869:Microtubule-Associated Proteins / Q000032:analysis* / Q000737:chemistry; D008870:Microtubules / Q000737:chemistry / Q000648:ultrastructure*; D010363:Pattern Recognition, Automated / Q000379:methods* / Q000592:standards; D021381:Protein Transport; D014404:Tubulin / Q000032:analysis* / Q000737:chemistry
chemical_list: D008869:Microtubule-Associated Proteins; D014404:Tubulin; D049452:Green Fluorescent Proteins