title: Multiscale integration of -omic, imaging, and clinical data in biomedical informatics.
abstract: This paper reviews challenges and opportunities in multiscale data integration for biomedical informatics. Biomedical data can come from different biological origins, data acquisition technologies, and clinical applications. Integrating such data across multiple scales (e.g., molecular, cellular/tissue, and patient) can lead to more informed decisions for personalized, predictive, and preventive medicine. However, data heterogeneity, community standards in data acquisition, and computational complexity are big challenges for such decision making. This review describes genomic and proteomic (i.e., molecular), histopathological imaging (i.e., cellular/tissue), and clinical (i.e., patient) data; it includes case studies for single-scale (e.g., combining genomic or histopathological image data), multiscale (e.g., combining histopathological image and clinical data), and multiscale and multiplatform (e.g., the Human Protein Atlas and The Cancer Genome Atlas) data integration. Numerous opportunities exist in biomedical informatics research focusing on integration of multiscale and multiplatform data.
authors.affiliation: Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA 30332, USA. jhphan@gatech.edu
authors.forename: John H
authors.initials: JH
authors.lastname: Phan
authors.forename: Chang F
authors.initials: CF
authors.lastname: Quo
authors.forename: Chihwen
authors.initials: C
authors.lastname: Cheng
authors.forename: May Dongmei
authors.initials: MD
authors.lastname: Wang
mesh_terms: D019295:Computational Biology / Q000379:methods*; D016208:Databases, Factual; D003952:Diagnostic Imaging / Q000379:methods*; D006801:Humans; D007091:Image Processing, Computer-Assisted / Q000379:methods*; D008490:Medical Informatics / Q000379:methods*; D009369:Neoplasms / Q000235:genetics / Q000517:prevention & control