title: Bacterial diversity in different regions of gastrointestinal tract of Giant African snail (Achatina fulica).
abstract: The gastrointestinal (GI) tract of invasive land snail Achatina fulica is known to harbor metabolically active bacterial communities. In this study, we assessed the bacterial diversity in the different regions of GI tract of Giant African snail, A. fulica by culture-independent and culture-dependent methods. Five 16S rRNA gene libraries from different regions of GI tract of active snails indicated that sequences affiliated to phylum γ-Proteobacteria dominated the esophagus, crop, intestine, and rectum libraries, whereas sequences affiliated to Tenericutes dominated the stomach library. On phylogenetic analysis, 30, 27, 9, 27, and 25 operational taxonomic units (OTUs) from esophagus, crop, stomach, intestine, and rectum libraries were identified, respectively. Estimations of the total bacterial diversity covered along with environmental cluster analysis showed highest bacterial diversity in the esophagus and lowest in the stomach. Thirty-three distinct bacterial isolates were obtained, which belonged to 12 genera of two major bacterial phyla namely γ-Proteobacteria and Firmicutes. Among these, Lactococcus lactis and Kurthia gibsonii were the dominant bacteria present in all GI tract regions. Quantitative real-time polymerase chain reaction (qPCR) analysis indicated significant differences in bacterial load in different GI tract regions of active and estivating snails. The difference in the bacterial load between the intestines of active and estivating snail was maximum. Principal component analysis (PCA) of terminal restriction fragment length polymorphism suggested that bacterial community structure changes only in intestine when snail enters estivation state.
authors.affiliation: Molecular Biology Unit, National Centre for Cell Science, Ganeshkhind, Pune, Maharashtra, India.
authors.forename: Kiran D
authors.initials: KD
authors.lastname: Pawar
authors.forename: Sunil
authors.initials: S
authors.lastname: Banskar
authors.forename: Shailendra D
authors.initials: SD
authors.lastname: Rane
authors.forename: Shakti S
authors.initials: SS
authors.lastname: Charan
authors.forename: Girish J
authors.initials: GJ
authors.lastname: Kulkarni
authors.forename: Shailesh S
authors.initials: SS
authors.lastname: Sawant
authors.forename: Hemant V
authors.initials: HV
authors.lastname: Ghate
authors.forename: Milind S
authors.initials: MS
authors.lastname: Patole
authors.forename: Yogesh S
authors.initials: YS
authors.lastname: Shouche
mesh_terms: D000818:Animals; D001483:Base Sequence; D015169:Colony Count, Microbial; D020563:Gammaproteobacteria / Q000235:genetics*; D041981:Gastrointestinal Tract / Q000382:microbiology*; D014644:Genetic Variation; D008969:Molecular Sequence Data; D010802:Phylogeny; D012150:Polymorphism, Restriction Fragment Length; D020641:Polymorphism, Single Nucleotide; D025341:Principal Component Analysis; D012329:RNA, Bacterial / Q000737:chemistry / Q000235:genetics; D012336:RNA, Ribosomal, 16S / Q000737:chemistry / Q000235:genetics; D060888:Real-Time Polymerase Chain Reaction; D016415:Sequence Alignment; D017422:Sequence Analysis, DNA; D012908:Snails / Q000382:microbiology*
chemical_list: D012329:RNA, Bacterial; D012336:RNA, Ribosomal, 16S