title: Polymorphism study of growth differentiation factor 9B (GDF9B) gene and its association with reproductive traits in sheep.
abstract: GDF9B protein plays a critical role in growth and differentiation of early ovarian follicles. In Inverdale and Hanna sheep, mutations in exon-2 of GDF9B gene have been recorded to show increased ovulation rate in heterozygous condition whereas homozygotes are infertile. Present screen study was carried out to explore the presence of these reported mutations in Corriedale and Local Kashmir Valley sheep with high rate of twinning. Exon-2 of GDF9B gene was amplified and the polymorphism was explored by SSCP technique. In the process three different bandings were observed. Later on these patterns corresponded with three different allelic forms on nucleotide sequencing. Phylogenetic analysis revealed that the nucleotide sequences of alleles observed in the present study and that of a published sequence of sheep were having the same point of origin. The results were also compared with goats, large ruminants and humans. The allelic frequencies of allele A and B were 0.64 and 0.36, respectively in Corriedale sheep whereas the allelic frequencies of all the three alleles in Kashmir Valley sheep were 0.60, 0.34 and 0.06. SNP "C" of the designated genotype AC was observed to pronounce a significant effect on litter size with average litter size going up by 0.63 as compared with the nearest genotype AB wherein the litter size was 1.29±0.05. The average litter size between AA and AB genotypes did not vary significantly.
authors.affiliation: Molecular Genetics Laboratory, Division of Animal Genetics and Breeding, Faculty of Veterinary Sciences and Animal Husbandry, Sher-e-Kashmir University of Agricultural Sciences and Technology Shuhama Srinagar Jammu and Kashmir, India. shabir1982@gmail.com
authors.forename: M
authors.initials: M
authors.lastname: Shabir
authors.forename: T A S
authors.initials: TA
authors.lastname: Ganai
authors.forename: S S
authors.initials: SS
authors.lastname: Misra
authors.forename: Ruksana
authors.initials: R
authors.lastname: Shah
authors.forename: Tavsief
authors.initials: T
authors.lastname: Ahmad
mesh_terms: D000595:Amino Acid Sequence; D000818:Animals; D001483:Base Sequence; D055430:Bone Morphogenetic Protein 15 / Q000235:genetics*; D005260:Female; D005787:Gene Frequency; D056726:Genetic Association Studies; D005838:Genotype; D008098:Litter Size / Q000235:genetics*; D008969:Molecular Sequence Data; D010802:Phylogeny; D018807:Polymorphism, Single-Stranded Conformational; D017422:Sequence Analysis, DNA; D012689:Sequence Homology, Nucleic Acid; D012741:Sexual Maturation / Q000235:genetics; D012756:Sheep / Q000235:genetics*
chemical_list: D055430:Bone Morphogenetic Protein 15