title: Divalent metal activation of a GH43 β-xylosidase.
abstract: Depolymerization of xylan, a major fraction of lignocellulosic biomass, releases xylose which can be converted into transportation fuels and chemical feedstocks. A requisite enzyme for the breakdown of xylan is β-xylosidase. A gene encoding the 324-amino acid β-xylosidase, RS223-BX, was cloned from an anaerobic mixed microbial culture. This glycoside hydrolase belongs to family 43. Unlike other GH43 enzymes, RS223-BX can be strongly activated by exogenously supplied Ca(2+), Co(2+), Fe(2+), Mg(2+), Mn(2+) and Ni(2+) (e.g., 28-fold by Mg(2+)) and it is inhibited by Cu(2+) or Zn(2+). Sedimentation equilibrium centrifugation experiments indicated that the divalent metal cations mediate multimerization of the enzyme from a dimeric to a tetrameric state, which have equal catalytic activity on an active-site basis. Compared to the determined active sites of other GH43 β-xylosidases, the predicted active site of RS223-BX contains two additional amino acids with carboxylated side chains that provide potential sites for divalent metal cations to reside. Thus, the divalent metal cations likely occupy the active site and participate in the catalytic mechanism. RS223-BX accepts as substrate xylobiose, arabinobiose, 4-nitrophenyl-β-D-xylopyranoside, and 4-nitrophenyl-α-L-arabinofuranoside. Additionally, the enzyme has good pH and temperature stabilities and a large K(i) for D-glucose (1.3 M), favorable properties for performance in saccharification reactors.
authors.affiliation: USDA-ARS-WRRC, 800 Buchanan Street, Albany, CA 94710, USA. Charles.Lee@ars.usda.gov
authors.forename: Charles C
authors.initials: CC
authors.lastname: Lee
authors.forename: Jay D
authors.initials: JD
authors.lastname: Braker
authors.forename: Arabela A
authors.initials: AA
authors.lastname: Grigorescu
authors.forename: Kurt
authors.initials: K
authors.lastname: Wagschal
authors.forename: Douglas B
authors.initials: DB
authors.lastname: Jordan
mesh_terms: D000595:Amino Acid Sequence; D000693:Anaerobiosis; D002384:Catalysis; D020134:Catalytic Domain; D002413:Cations, Divalent / Q000494:pharmacology*; D003001:Cloning, Molecular; D004247:DNA / Q000235:genetics / Q000302:isolation & purification; D004789:Enzyme Activation / Q000187:drug effects; D004795:Enzyme Stability; D015723:Gene Library; D006863:Hydrogen-Ion Concentration; D007700:Kinetics; D008969:Molecular Sequence Data; D020836:Protein Structure, Quaternary / Q000187:drug effects; D011993:Recombinant Fusion Proteins / Q000378:metabolism; D016415:Sequence Alignment; D017386:Sequence Homology, Amino Acid; D012722:Sewage / Q000382:microbiology; D013379:Substrate Specificity; D013696:Temperature; D014995:Xylosidases / Q000037:antagonists & inhibitors / Q000145:classification / Q000302:isolation & purification / Q000378:metabolism*
chemical_list: D002413:Cations, Divalent; D011993:Recombinant Fusion Proteins; D012722:Sewage; D004247:DNA; D014995:Xylosidases; C026579:exo-1,4-beta-D-xylosidase