title: Analysis of interferograms of multi-layered biological samples obtained from full field optical coherence tomography systems.
abstract: Several methods were developed in the past to analyze interferograms produced by optical coherence tomography, and successfully applied to simulated or animated samples. However, these techniques do not cope with noisy and distorted interferograms from biological tissues. In this paper, known techniques, including the fast Fourier transform and several variations of the continuous wavelet transform, were employed to analyze the interferogram data. However, to cope with the difficulties in biological data, pre- and post-processing procedures and adaptive thresholding were developed to provide stability and robustness. Additionally, three-dimensional structural models of the biological samples were constructed, and revealed information like the number and locations of interfaces, the layer thickness and pattern, and abnormalities.
authors.affiliation: Department of Electro-Optics Engineering, Ben-Gurion University of the Negev, P.O. Box 653, Beer-Sheva 84105, Israel.
authors.forename: Jenny
authors.initials: J
authors.lastname: Sokolovsky
authors.forename: Yitzhak
authors.initials: Y
authors.lastname: Yitzhaky
authors.forename: Ibrahim
authors.initials: I
authors.lastname: Abdulhalim
mesh_terms: D003198:Computer Simulation; D005583:Fourier Analysis; D005737:Garlic / Q000502:physiology*; D021621:Imaging, Three-Dimensional; D007368:Interferometry / Q000295:instrumentation / Q000379:methods*; D016011:Normal Distribution; D019697:Onions / Q000502:physiology*; D012815:Signal Processing, Computer-Assisted; D013997:Time Factors; D041623:Tomography, Optical Coherence / Q000379:methods*