title: Quantitative peptidomics for discovery of circadian-related peptides from the rat suprachiasmatic nucleus.
abstract: In mammals the suprachiasmatic nucleus (SCN), the master circadian clock, is sensitive to light input via the optic chiasm and synchronizes many daily biological rhythms. Here we explore variations in the expression levels of neuropeptides present in the SCN of rats using a label-free quantification approach that is based on integrating peak intensities between daytime, Zeitgeber time (ZT) 6, and nighttime, ZT 18. From nine analyses comparing the levels between these two time points, 10 endogenous peptides derived from eight prohormones exhibited significant differences in their expression levels (adjusted p-value <0.05). Of these, seven peptides derived from six prohormones, including GRP, PACAP, and CART, exhibited ≥ 30% increases at ZT 18, and the VGRPEWWMDYQ peptide derived from proenkephalin A showed a >50% increase at nighttime. Several endogenous peptides showing statistically significant changes in this study have not been previously reported to alter their levels as a function of time of day, nor have they been implicated in prior functional SCN studies. This information on peptide expression changes serves as a resource for discovering unknown peptide regulators that affect circadian rhythms in the SCN.
authors.affiliation: Department of Chemistry, Beckman Institute, University of Illinois at Urbana-Champaign , Urbana, Illinois 61801, USA.
authors.forename: Ji Eun
authors.initials: JE
authors.lastname: Lee
authors.forename: Leonid
authors.initials: L
authors.lastname: Zamdborg
authors.forename: Bruce R
authors.initials: BR
authors.lastname: Southey
authors.forename: Norman
authors.initials: N
authors.lastname: Atkins
authors.forename: Jennifer W
authors.initials: JW
authors.lastname: Mitchell
authors.forename: Mingxi
authors.initials: M
authors.lastname: Li
authors.forename: Martha U
authors.initials: MU
authors.lastname: Gillette
authors.forename: Neil L
authors.initials: NL
authors.lastname: Kelleher
authors.forename: Jonathan V
authors.initials: JV
authors.lastname: Sweedler
mesh_terms: D000595:Amino Acid Sequence; D000818:Animals; D057906:Circadian Clocks; D002940:Circadian Rhythm; D019886:Gastrin-Releasing Peptide / Q000032:analysis / Q000235:genetics; D005786:Gene Expression Regulation; D008027:Light; D008297:Male; D008969:Molecular Sequence Data; D009419:Nerve Tissue Proteins / Q000032:analysis / Q000235:genetics; D009479:Neuropeptides / Q000737:chemistry* / Q000235:genetics; D010446:Peptide Fragments / Q000032:analysis; D051219:Pituitary Adenylate Cyclase-Activating Polypeptide / Q000032:analysis / Q000235:genetics; D040901:Proteomics; D051381:Rats; D020318:Rats, Long-Evans; D013493:Suprachiasmatic Nucleus / Q000737:chemistry* / Q000502:physiology; D014660:Vasoactive Intestinal Peptide / Q000032:analysis / Q000235:genetics; D000098882:Cocaine- and Amphetamine-Regulated Transcript Protein
chemical_list: D009419:Nerve Tissue Proteins; D009479:Neuropeptides; D010446:Peptide Fragments; D051219:Pituitary Adenylate Cyclase-Activating Polypeptide; D000098882:Cocaine- and Amphetamine-Regulated Transcript Protein; D014660:Vasoactive Intestinal Peptide; D019886:Gastrin-Releasing Peptide