title: Inflammation and immune-related candidate gene associations with acute lung injury susceptibility and severity: a validation study.
abstract: BACKGROUND
  Common variants in genes related to inflammation, innate immunity, epithelial cell function, and angiogenesis have been reported to be associated with risks for Acute Lung Injury (ALI) and related outcomes. We tested whether previously-reported associations can be validated in an independent cohort at risk for ALI.
  
  
  METHODS
  We identified 37 genetic variants in 27 genes previously associated with ALI and related outcomes. We prepared allelic discrimination assays for 12 SNPs from 11 genes with MAF>0.05 and genotyped these SNPs in Caucasian subjects from a cohort of critically ill patients meeting criteria for the systemic inflammatory response syndrome (SIRS) followed for development of ALI, duration of mechanical ventilation, and in-hospital death. We tested for associations using additive and recessive genetic models.
  
  
  RESULTS
  Among Caucasian subjects with SIRS (n = 750), we identified a nominal association between rs2069832 in IL6 and ALI susceptibility (OR(adj) 1.61; 95% confidence interval [CI], 1.04-2.48, P = 0.03). In a sensitivity analysis limiting ALI cases to those who qualified for the Acute Respiratory Distress Syndrome (ARDS), rs61330082 in NAMPT was nominally associated with risk for ARDS. In terms of ALI outcomes, SNPs in MBL2 (rs1800450) and IL8 (rs4073) were nominally associated with fewer ventilator-free days (VFDs), and SNPs in NFE2L2 (rs6721961) and NAMPT (rs61330082) were nominally associated with 28-day mortality. The directions of effect for these nominal associations were in the same direction as previously reported but none of the associations survived correction for multiple hypothesis testing.
  
  
  CONCLUSIONS
  Although our primary analyses failed to statistically validate prior associations, our results provide some support for associations between SNPs in IL6 and NAMPT and risk for development of lung injury and for SNPs in IL8, MBL2, NFE2L2 and NAMPT with severity in ALI outcomes. These associations provide further evidence that genetic factors in genes related to immunity and inflammation contribute to ALI pathogenesis.
authors.affiliation: Division of Pulmonary and Critical Care Medicine, Harborview Medical Center, University of Washington, Seattle, WA, USA.
authors.forename: D Shane
authors.initials: DS
authors.lastname: O'Mahony
authors.forename: Bradford J
authors.initials: BJ
authors.lastname: Glavan
authors.forename: Tarah D
authors.initials: TD
authors.lastname: Holden
authors.forename: Christie
authors.initials: C
authors.lastname: Fong
authors.forename: R Anthony
authors.initials: RA
authors.lastname: Black
authors.forename: Gail
authors.initials: G
authors.lastname: Rona
authors.forename: Paula
authors.initials: P
authors.lastname: Tejera
authors.forename: David C
authors.initials: DC
authors.lastname: Christiani
authors.forename: Mark M
authors.initials: MM
authors.lastname: Wurfel
mesh_terms: D055371:Acute Lung Injury / Q000235:genetics* / Q000276:immunology; D000368:Aged; D015331:Cohort Studies; D005260:Female; D006801:Humans; D007249:Inflammation / Q000235:genetics*; D008297:Male; D008875:Middle Aged; D020641:Polymorphism, Single Nucleotide; D012121:Respiration, Artificial / Q000009:adverse effects; D012720:Severity of Illness Index